[Rd] stats glm Response Format Ambiguity

or, it will be coerced into a factor. "a vector of observations" doesn't really narrow it down much. The warning emitted when y a is vector of proportions isn't particularly informative, either.

Re: [Rd] Changes in the survival package (long)

Good day, It is impressive to see such sustained package maintenance. -- Dr. Dario Strbenac Bioinformatics Research Associate School of Mathematics and Statistics, University of Sydney Camperdown N.S.W. 2050, Australia

Re: [Rd] confint Attempts to Use All Server CPUs by Default

inistrator. ------ Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] confint Attempts to Use All Server CPUs by Default

users would know that export OPENBLAS_NUM_THREADS=1 is a solution. -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r

[Rd] Subset has No Examples for Vector Data

han an empty vector. ------ Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] save.image Non-responsive to Interrupt

Hello, Could save.image() be redesigned so that it promptly responds to Ctrl+C? It prevents the command line from being used for a number of hours if the contents of the workspace are large. -- Dario Strbenac University of Sydney Camperdown NSW 2050

[Rd] Combinations and Permutations

? -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] Data Frame Conversion and Table Input

consistent for base data types? -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] [External] svd For Large Matrix

GSEGV, Segmentation fault. 0x77649c10 in ATL_dgecopy () from /usr/lib/x86_64-linux-gnu/libblas.so.3 -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.et

[Rd] svd For Large Matrix

60) testSVD <- svd(test) *** caught segfault *** address 0x7fe93514d618, cause 'memory not mapped' Traceback: 1: La.svd(x, nu, nv) 2: svd(test) ------ Dario Strbenac University of Sydney Camperdown NSW 2050 Australia

Re: [Rd] dgTMatrix Segmentation Fault

seq data, which typically has about 20 genomic regions (rows) and perhaps 10 biological cells (columns). ------ Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing li

Re: [Rd] dgTMatrix Segmentation Fault

. -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] dgTMatrix Segmentation Fault

n fault and result is returned. May it be made more robust for dgTMatrix? ------ Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] SVG Error on Windows if Multiplication Character Present

in an R graphics window. The error only occurs when exported as an SVG file. Using %*% instead of × avoids the error but it's perhaps worth mentioning in case it could be easily handled by R. -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia

Re: [Rd] Ignore Sites Option For libPaths

/R/site-library" "/usr/lib/R/library" /tmp and /var exist of course. -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] Ignore Sites Option For libPaths

rary/R" [3] "/usr/lib/R/site-library" "/usr/lib/R/library" -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] Possibility of Less Verbose Stack Trace

995159, and hundreds more lines of numbers. R CMD check -h doesn't seem to list any options which could be applicable. -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Grid pmax Unusual Result In Alpha Version

Sorry, I was dragging the laptop's cursor towards the Discard button but it activated on Send instead. Please ignore or delete from mailing archive. From: Martin Maechler Sent: Monday, 23 March 2020 11:10 PM To: Dario Strbenac Subject: Re: [Rd] Grid

[Rd] Grid pmax Unusual Result In Alpha Version

Hello, I find that the width of a plot is zero when three grobs are input but is as expected when any subset of two of the three grobs are used. -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia

Re: [Rd] Documentation for sd (stats) + suggestion

Good day, It is implemented by the CRAN package multicon. The function is named popsd. But it does seem like something R should provide without creating a package dependency. -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia

Re: [Rd] A different error in sample()

Good day, The use of "rounding" also doesn't make sense. If The number is halfway between two integers, it is rounded to the nearest even integer. > round(2.5) [1] 2 ------ Dario Strbenac University of Sydney Camperdown

Re: [Rd] Library lib.loc Option Ignored for Dependencies

x27;s library command. The documentation of library and its description of lib.loc doesn't suggest that the alternation of source directories would occur. ------ Dario Strbenac University of Sydney Camperdown NSW 2050

Re: [Rd] Library lib.loc Option Ignored for Dependencies

by ‘statistics’ The latest version of the statistics package is loaded, but the directory of latest packages is ignored by R when it considers the package dependency. -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Library lib.loc Option Ignored for Dependencies

Good day, Now that I read about Renaud's problem, I realise that it is effectively the same as mine. -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list

[Rd] Library lib.loc Option Ignored for Dependencies

rsion requirements not being met. The documentation of the library function doesn't explain what the intended result is in such a case, but it could reasonably be expected that R would also load the dependencies from the user-specified lib.loc folder. --

[Rd] Automatic Compression by Save Causes Check Warning

for R packages to pass the checking process these days. ------ Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] makeCluster Stall on 32-bit Windows

ed in BiocParallel and was recommended to ask on r-devel mailing list since bplapply utilises makeCluster. CRAN only checks 64-bit computers, so it might not have been checked on a 32-bit computer. -- Dario Strbenac University of Sydney Camperdown NSW 2050 Aust

[Rd] makeCluster Stall on 32-bit Windows

ther attached packages: [1] snow_0.4-2 loaded via a namespace (and not attached): [1] compiler_3.5.0 tools_3.5.0yaml_2.1.19 ------ Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-proj

[Rd] Illegible Long S4 Methods in Reference Manual Index

the page. May R CMD Rd2pdf automatically wrap these for legibility? ------ Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] sparse.model.matrix Generates Non-Existent Factor Levels if Ord.factor Columns Present

nette of URL https://cran.r-project.org/web/packages/xgboost/vignettes/discoverYourData.html I did not know to read the help page for contr.poly after reading the sparse.discrim.matrix help page. Perhaps there could be a helpful mention added to it? --

[Rd] sparse.model.matrix Generates Non-Existent Factor Levels if Ord.factor Columns Present

" "depth" [21] "table""price""x""y""z" Can it be made to work correctly for both plain and ordered factors? > sessionInfo() R Under development (unstable) (2018-02-06 r74231) Platform:

[Rd] as.list method for by Objects

an alternative that only returns TRUE for lists. It's also confusing initially that > class(x) [1] "by" > is.list(x) [1] TRUE since there's no explicit class definition for "by" and no mention if it has any superclasses. -

[Rd] Incorrect Import by Data for CSV File

;;", as.is=FALSE)". I suggest that the semi-colon used as the column separator be changed to a comma. ------ Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list

[Rd] Simplify and By Convert Factors To Numeric Values

ng under: Debian GNU/Linux 8 (jessie) Matrix products: default BLAS: /dskh/nobackup/biostat/software/R-3.4.0/lib/libRblas.so LAPACK: /dskh/nobackup/biostat/software/R-3.4.0/lib/libRlapack.so ------ Dario Strbenac University of Sydney C

Re: [Rd] pairwiseAlignment Improvements

This has been re-sent to the Bioconductor Development mailing list and may be deleted from the archive if it is possible. __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] pairwiseAlignment Improvements

ndel documented in Numeric Summary Methods? Unlike nchar and score, they are not numerical summaries of the data. It'd be nice to see this part of Biostrings thoroughly refactored with more focus on UX. -- Dario Strbenac University of Sydney Camperdown NS

Re: [Rd] Grapics Device Resolution Limits

e.org/content/authorinfo#idp1498768 -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] Grapics Device Resolution Limits

2-bit) Running under: Windows 7 (build 7601) Service Pack 1 -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] R Package Installation Ignores libPaths Setting

Good day, Thank you for the suggestions. I had a .libPaths command in my .Rprofile file. I have now removed it and specified R_LIBS in .Renviron. -- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia

Re: [Rd] R Package Installation Ignores libPaths Setting

/dario/tmp/ $ Rscript -e ".libPaths()" [1] "/dskh/nobackup/biostat/Bioconductor" "/usr/local/lib/R/site-library" [3] "/usr/lib/R/site-library" "/usr/lib/R/library" Is there some other crucial information which I have missed

[Rd] R Package Installation Ignores libPaths Setting

ors_0.9.34BiocGenerics_0.17.3 The new library path is being ignored when the package is attempted to be loaded at the end of the installation process. How can the installation be successful ? ------ Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050

Re: [Rd] More Capability for Capabilities

Good day, To clarify, extSoftVersion and grSoftVersion first became available in R 3.2.3. The university's servers are running R 3.2.2, so I didn't see it. ------ Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050

[Rd] More Capability for Capabilities

Good day, The capabilities function gives a logical result of which features R has been compiled with. Is there a more advanced variety of the function that will give the version number of the library, or its system path, rather than simply TRUE ? -- Dario

[Rd] Inconsistencies of Fundamental Summary Functions

> min(as.list(database[, 2:3])) Error in min(as.list(database[, 2:3])) : invalid 'type' (list) of argument -- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia __

Re: [Rd] URW Fonts Description in Installation and Administration Manual

(jessie) Release:8.2 Codename: jessie -- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] URW Fonts Description in Installation and Administration Manual

mentioned that are important for these two distributions ? ------ Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] save.image Doesn't Save Objects When Browsing

uses the variables in the current environment to be saved. Is the documentation of save.image() missing a special case ? -- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] S4 Method Dispatch for Class Defined as Attribute

deprecated in a future version of R ? -- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] Can't Find Function After requireNamespace

1.1 (2014-07-10) Platform: x86_64-unknown-linux-gnu (64-bit) ------ Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] Unlisting Nested Lists of Factors

(64-bit) ------ Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] capture.output on S4 slot

)@transform) [1] "function () " "{" [3] "}""" > capture.output(new("TransformParams", transform = function(){}, otherParams = > list())@transform) [1] "function(){}" Why is the

Re: [Rd] Listing Packages in Depends or Imports

uot;almost always". -- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] Listing Packages in Depends or Imports

NAMESPACE file -- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] do.call Error for Function Not Present When Manually Called

I had a look at the source code, and your prediction is right. There is line at the beginning of the naiveBayes function : Yname <- deparse(substitute(y)) When I manually edited it to list(quote(y)), it works. __ R-devel@r-project.org mailing list

[Rd] do.call Error for Function Not Present When Manually Called

al_2.37-7tcltk_3.1.0 [67] tools_3.1.0XML_3.98-1.1 xtable_1.7-3 [70] XVector_0.2.0 zlibbioc_1.8.0 -- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia ___

[Rd] mcmapply Core Usage

REMENT=en_AU.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] parallel stats graphics grDevices utils datasets methods [8] base loaded via a namespace (and not attached): [1] tools_3.1.0 ------ Dario Strbenac PhD Student University o

[Rd] Ellipsis to Two Functions When One Has Nested Functions

error into a warning message ? ------ Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] Random Count Generation with rnbinom

ase packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_3.0.2 ------ Dario Strbenac PhD Student University of Sydney Camperdown NSW 20

[Rd] Undocumented S4 method Warning For Bracket

y looks like : setMethod("[", "BayMethList", function(x, i) { # Code to subset object. } It has 2 parameters, not 3. The warning also happens in R 3.0.2 Release. Has this been fixed in Patched but not in the development version ? -- Da

Re: [Rd] Shell Function not on Linux

-help, not R-devel. On 29/07/2013 08:00, Dario Strbenac wrote: > Hello, > > Using R for Windows, I am able to use the shell function : > > R version 3.0.1 (2013-05-16) -- "Good Sport" > Copyright (C) 2013 The R Foundation for Statistical Computing > Platform:

[Rd] Shell Function not on Linux

ation for Statistical Computing ISBN 3-900051-07-0 Platform: i486-pc-linux-gnu (32-bit) ... ... > shell() Error: could not find function "shell" What should I do now ? -

[Rd] R-2.13.2 beta build for Windows

andle the request. -- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listi

[Rd] Install R 2.14 From Source : lattice Error

ice.so What should I try next ? ------ Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] Exiting R Gracefully

l R exit 3: exit R without saving workspace 4: exit R saving workspace Selection: 3 Error: no graphics system to unregister > > q("no", runLast = FALSE) Error in q("no", runLast = FALSE) : no graphics system to unregister -- Dario St

Re: [Rd] R CMD check and Suggests Packages

Original message >Date: Wed, 4 May 2011 09:44:14 +0200 >From: Martin Maechler >Subject: Re: [Rd] R CMD check and Suggests Packages >To: >Cc: Martin Maechler , Hervé Pagès >, > export _R_CHECK_FORCE_SUGGESTS_=false Curiously, that option isn't found in the current R-exts manual

Re: [Rd] R CMD check and Suggests Packages

Hello, >If Dario really uses R 2.13.0 (or newer), >and he gets the above error message for a package that is not >required but only suggested, >I think we'd need a clear, ideally simple, >reproducible example, here. I was able to reproduce it. I made a new package with package.skeleton(), then a

Re: [Rd] R CMD check and Suggests Packages

The intention was more to have another place to make the user aware of a real-sized data package I made, since the package only comes with trivially sized data. The help examples and vignette only use the small sized data, and never the realistic dataset. I suppose it is better just to put a ref

[Rd] R CMD check and Suggests Packages

han ‘Depends’ in order to make lean installations possible." -- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia __ R-devel@r-project.org mailin

Re: [Rd] Package Name Not Found Warning

d Warning >To: d.strbe...@garvan.org.au >Cc: r-devel@r-project.org > >On 04/19/2011 08:00 PM, Dario Strbenac wrote: >> Ah, I think it's happening because I have >> >> setOldClass(AffymetrixCelSet) in my package. > >if AffymetrixCelSet is fro

Re: [Rd] Package Name Not Found Warning

ate: Tue, 19 Apr 2011 19:23:20 -0700 >From: Martin Morgan >Subject: Re: [Rd] Package Name Not Found Warning >To: d.strbe...@garvan.org.au >Cc: r-devel@r-project.org > >On 04/19/2011 05:00 PM, Dario Strbenac wrote: >> Hello, >> >> I've got a DESCRIPTION fil

[Rd] Package Name Not Found Warning

the packing in an R session and looking at the sessionInfo shows the package name was properly processed. Is this a spurious warning ? I'm using: R version 2.13.0 (2011-04-13) Platform: x86_64-unknown-linux-gnu (64-bit) (actually Ubuntu 10.10) ------ Dar

Re: [Rd] DESCRIPTION file and Rd examples

>Date: Fri, 15 Apr 2011 20:34:54 -0700 >From: Martin Morgan >Subject: Re: [Rd] DESCRIPTION file and Rd examples >To: Simon Urbanek >Cc: d.strbe...@garvan.org.au, r-devel@r-project.org > >On 04/15/2011 11:18 AM, Simon Urbanek wrote: >> >> On Apr 14, 2011,

[Rd] DESCRIPTION file and Rd examples

data.frame -> as.data.frame.default I have GenomicRanges listed in my Imports: field, and IRanges in the Suggests: of the DESCRIPTION file (it's require()d elsewhere). I'm trying to avoid putting packages in Depends: , so my package loads fast. Any tips of what I'm not understanding pro

Re: [Rd] R CMD check for 2.13 rc

Original message >Date: Tue, 5 Apr 2011 17:21:55 -0700 >From: henrik.bengts...@gmail.com (on behalf of Henrik Bengtsson >) >Subject: Re: [Rd] R CMD check for 2.13 rc >To: d.strbe...@garvan.org.au >Cc: r-devel@r-project.org Yes, I think the warning about normalizePath will be fine when

[Rd] Rcheck Directory

. ...... -- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] R CMD check for 2.13 rc

nt this class that I don't own: * checking for missing documentation entries ... WARNING Undocumented S4 classes: AffymetrixCelSet Is this truly necessary ? -- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlin

[Rd] VennDiagram Bugs

evices utils datasets methods base other attached packages: [1] VennDiagram_1.0.0 -- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] sys.calls Behaviour

) [[4]] conv(as.numeric(x)) > > sessionInfo() R version 2.12.2 (2011-02-25) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252 LC_MONETARY=English_Australia.1252 LC_NUMERIC=C LC_TIME=English_Australia.1252

Re: [Rd] large vignette problem

producing jpg files instead of PDF? > >Can anyone advise? > >thanks > >Robin > > >-- >Robin Hankin >Uncertainty Analyst >hankin.ro...@gmail.com > >__ >R-devel@r-project.org mailing list >https://stat.ethz.ch

Re: [Rd] Memory Leak

d] Memory Leak >To: d.strbe...@garvan.org.au >Cc: r-devel@r-project.org > > >On Feb 1, 2011, at 9:00 PM, Dario Strbenac wrote: > >> Hello, >> >> I'm trying to track down the cause of some extreme memory usage and I've >> been using Dirk Eddelbuette

[Rd] Memory Leak

gain those missing Gigabytes ? ------ Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] tar R command

Hello, The documentation for the tar command leads me to think there is an internal implementation when the command can't be found in the OS. However, it doesn't seem to be the case, as I get an empty .tar file generated on a small example I made : > dir(pattern = "jpg") [1] "MA56237502_635.jp

Re: [Rd] Loading Cached Weaver Objects

org, s...@userprimary.net > >On 10/19/2010 08:33 PM, Dario Strbenac wrote: >> Hello, >> >> I'm looking for a way to extract objects from what gets created when I >> Sweave with driver = weaver(). I found where the .Rdata objects are, but >> when I load one into

[Rd] Loading Cached Weaver Objects

"/home/darstr/r_env_cache/2.11.0/AbsMeth_5/ac047940aaa9cf1a1ec09f1628b13381.RData") > ls() [1] "cacheEnv" "DEPS" "SESSION" What can I try next ? -- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Insti

Re: [Rd] R-forge: Web server down / no space left

HINT: Check free disk >space." > >/Henrik > >__ >R-devel@r-project.org mailing list >https://stat.ethz.ch/mailman/listinfo/r-devel -- Dario Strbenac Research Assistant Cancer Epigenetics G

[Rd] Dispatch method on S3 or S4 class

;, "GRangesList", function(x, y, a, b, c) { x; } ) Thanks, Dario. -- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] S4 Method Signatures

dardGeneric("myFun")}) setMethod("myFun", "numeric", function(rs, colour = "Blue") { cat(rs*100, colour) }) setMethod("myFun", "character", function(cs, colour = "Red") { cat(cs, colour) }) Thanks for any tip

[Rd] S4 Method Rd Warning

ents{ \item{rs}{jjj} \item{organism}{ghi} \item{seqLen}{def} \item{do.warn}{abc} \item{...}{xyz} } \details{ Details. } \value{ Text here. } \author{A Person} \examples{ #See the manual } Thanks, Dario. ------ Dario Strbenac Research Assistant Cance

[Rd] R CMD check data reading

ess based on the Calls: in the above message. How could the script work when copied and pasted into a session, but fail under R CMD check ? I'm out of ideas on this one. ----- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Rese