Hi,
I have a couple of new errors in our package when I check it on R 2.13-rc
(r55310). The first one that's mystifying me is
* checking R code for possible problems ... NOTE
Error : object normalizePath is not exported by 'namespace:utils'
Error : object normalizePath is not exported by 'namespace:utils'
Firstly, it's strange to see NOTE and Error being used interchangeably here.
The package is being developed by a couple of us, so I checked that there were
no calls to normalizePath in any of our code, and there aren't:
darstr@clark-lab:~/Repitools_github/pkg$ grep -r normalizePath .
./Repitools.Rcheck/00check.log:Error : object normalizePath is not exported by
'namespace:utils'
./Repitools.Rcheck/00check.log:Error : object normalizePath is not exported by
'namespace:utils'
./Repitools.Rcheck/tests/tests.Rout.fail:Error : object 'normlizePath' is not
exported by 'namespace:utils'
I haven't got a clue where to look next.
My second concern is that I have used the code:
setOldClass("AffymetrixCelSet")
to make an S3 class be S4 dispatchable on. But R 2.13 wants me to document this
class that I don't own:
* checking for missing documentation entries ... WARNING
Undocumented S4 classes:
AffymetrixCelSet
Is this truly necessary ?
--------------------------------------
Dario Strbenac
Research Assistant
Cancer Epigenetics
Garvan Institute of Medical Research
Darlinghurst NSW 2010
Australia
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