Re: [Rd] "Failed to locate the 'texi2pdf' output file"

2013-04-12 Thread Henrik Bengtsson
On Fri, Apr 12, 2013 at 3:53 PM, Kasper Daniel Hansen wrote: > Dan, > > This error looks _very_ similar to what I reported regarding the use of > 'foreach' inside a windows vignette, on the bioc-devel email list. As you > say, it looks funny that it lists the tex file, yet fails to find it. It's

Re: [Rd] "Failed to locate the 'texi2pdf' output file"

2013-04-12 Thread Kasper Daniel Hansen
Dan, This error looks _very_ similar to what I reported regarding the use of 'foreach' inside a windows vignette, on the bioc-devel email list. As you say, it looks funny that it lists the tex file, yet fails to find it. The issue had to do with closing relevant connections (for foreach, this wa

[Rd] "Failed to locate the 'texi2pdf' output file"

2013-04-12 Thread Dan Tenenbaum
Hi, Every day a few Bioconductor packages (different ones each day) fail to build, on Windows only, with an error like this: D:\biocbld\bbs-2.13-bioc\meat>D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data OrganismDbi [...] Error in find_vignette_product(name, by = "

Re: [Rd] La_svd compiler error

2013-04-12 Thread Antczak, Philipp
>From the sounds of it, it doesn't bode well for me compiling this package for >windows then? Phil On 12 Apr 2013, at 17:23, "Prof Brian Ripley" wrote: > On 12/04/2013 12:13, Duncan Murdoch wrote: >> On 13-04-11 7:41 AM, Antczak, Philipp wrote: >>> Dear All, >>> >>> I have been trying to comp

Re: [Rd] La_svd compiler error

2013-04-12 Thread Antczak, Philipp
I did include the Makevars in the src directory with the following line: PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) But this had no effect at all - still failed at La_svd As I said in Linux no problem at all - only in windows. Thanks Phil -Original Message- From: Duncan Murdoch [ma

Re: [Rd] La_svd compiler error

2013-04-12 Thread Prof Brian Ripley
On 12/04/2013 17:28, Antczak, Philipp wrote: From the sounds of it, it doesn't bode well for me compiling this package for windows then? For any platform, if you want it to actually work. Phil On 12 Apr 2013, at 17:23, "Prof Brian Ripley" wrote: On 12/04/2013 12:13, Duncan Murdoch wrote

Re: [Rd] La_svd compiler error

2013-04-12 Thread Prof Brian Ripley
On 12/04/2013 12:13, Duncan Murdoch wrote: On 13-04-11 7:41 AM, Antczak, Philipp wrote: Dear All, I have been trying to compile a package for windows that we have written. Since R version 3.0.0 the package doesn't compile any more. (On Linux the package compiles without errors). The error speci

[Rd] support for POSIXct classes in image.default axes

2013-04-12 Thread Michael Sumner
Hello, I would like to suggest the following change to image.default in src\library\graphics\R\image.R: 98c98 < plot(NA, NA, xlim = xlim, ylim = ylim, type = "n", xaxs = xaxs, --- > plot(x[1], y[1], xlim = xlim, ylim = ylim, type = "n", xaxs = xaxs, This provides all the support of ax

Re: [Rd] La_svd compiler error

2013-04-12 Thread Duncan Murdoch
On 13-04-11 7:41 AM, Antczak, Philipp wrote: Dear All, I have been trying to compile a package for windows that we have written. Since R version 3.0.0 the package doesn't compile any more. (On Linux the package compiles without errors). The error specifically says: gcc -m32 -I"C:/PROGRA~1/R/R

[Rd] La_svd compiler error

2013-04-12 Thread Antczak, Philipp
Dear All, I have been trying to compile a package for windows that we have written. Since R version 3.0.0 the package doesn't compile any more. (On Linux the package compiles without errors). The error specifically says: gcc -m32 -I"C:/PROGRA~1/R/R-30~1.0/include" -DNDEBUG -I"d:/RCompile/C