Re: numpy status update and help requested

2021-01-03 Thread Daniel Dickman
On Sun, 11 Oct 2020, Daniel Dickman wrote: > I hope a lot of the work to be able to update numpy has now been done. > Just a short summary below of what's left. Here's an update on what's left before numpy can be updated to the newer python3-only versions: (1) These ports have unfinished or

Re: UPDATE biology/py-biopython [Re: numpy status update and help requested]

2020-10-24 Thread Kurt Mosiejczuk
On Fri, Oct 16, 2020 at 05:57:16PM +0200, Martin Reindl wrote: > Am 16.10.20 um 08:58 schrieb Martin Reindl: > > On Sun, Oct 11, 2020 at 06:12:20PM -0400, Daniel Dickman wrote: > >> - biology/py-biopython > > Hello Daniel, > > attached is an update for biopython to 1.78. I did an complete overhau

Re: numpy status update and help requested

2020-10-23 Thread Brian Callahan
Hi Daniel -- On Sunday, October 11, 2020 6:12 PM, Daniel Dickman wrote: > I hope a lot of the work to be able to update numpy has now been done. > Just a short summary below of what's left. > > I don't think it's super urgent to get numpy updated to a newer version at > this point. But there are

Re: numpy status update and help requested

2020-10-23 Thread Daniel Dickman
On Sat, 24 Oct 2020, Brian Callahan wrote: > Hi Daniel -- > > On Sunday, October 11, 2020 6:12 PM, Daniel Dickman > wrote: > > > I hope a lot of the work to be able to update numpy has now been done. > > Just a short summary below of what's left. > > > > I don't think it's super urgent to g

Re: UPDATE biology/py-biopython [Re: numpy status update and help requested]

2020-10-16 Thread Martin Reindl
Am 16.10.20 um 08:58 schrieb Martin Reindl: > On Sun, Oct 11, 2020 at 06:12:20PM -0400, Daniel Dickman wrote: >> - biology/py-biopython > > Hello Daniel, > > attached is an update for biopython to 1.78. I did an complete overhaul of > the port including switch to python3 with quirks and conflict

UPDATE biology/py-biopython [Re: numpy status update and help requested]

2020-10-16 Thread Martin Reindl
On Sun, Oct 11, 2020 at 06:12:20PM -0400, Daniel Dickman wrote: > - biology/py-biopython Hello Daniel, attached is an update for biopython to 1.78. I did an complete overhaul of the port including switch to python3 with quirks and conflict markers. Tests still run quite alright on amd64. Comments

numpy status update and help requested

2020-10-11 Thread Daniel Dickman
I hope a lot of the work to be able to update numpy has now been done. Just a short summary below of what's left. I don't think it's super urgent to get numpy updated to a newer version at this point. But there are a few nice performance improvements, cleanups and bug fixes that might be nice t