I also mentioned this at the bottom of a reply to Benjamin, but to
make sure people joining the thread see it: I went ahead and put this
up on a github wiki page that everyone should be able to edit
https://github.com/njsmith/numpy/wiki/NA-discussion-status
We could move it to the numpy wiki or
On Wed, Nov 2, 2011 at 8:20 PM, Benjamin Root wrote:
> On Wednesday, November 2, 2011, Nathaniel Smith wrote:
>> By R compatibility, I specifically had in mind in-memory
>> compatibility. rpy2 provides a more-or-less seamless within-process
>> interface between R and Python (and specifically lets
any other means of getting it fixed?
-- Forwarded message --
From: Olivier Delalleau
Date: Thu, Nov 3, 2011 at 8:58 AM
Subject: Re: [Numpy-discussion] Fwd: numpy error with mkl 10.1
To: Discussion of Numerical Python
I'm sorry, I don't know. I'm not at all an expert about numpy
thank you very much for your kind help.
On Thu, Nov 3, 2011 at 8:58 AM, Olivier Delalleau wrote:
> I'm sorry, I don't know. I'm not at all an expert about numpy
> installation, I just happened to have access to a computer with a working
> install of numpy with MKL, so I thought it might help...
I'm sorry, I don't know. I'm not at all an expert about numpy installation,
I just happened to have access to a computer with a working install of
numpy with MKL, so I thought it might help... but I'm afraid that's all I
can do for you :/
-=- Olivier
2011/11/2 akshar bhosale
> thanks once again
thanks once again. how can i use ur distutils directly (ur supplied files
etc)
On Thu, Nov 3, 2011 at 8:15 AM, Olivier Delalleau wrote:
> Yes they pass:
>
> Ran 2030 tests in 6.672s
>
> OK (KNOWNFAIL=1)
>
>
> Google "einsum hang" I know you're not the first one with this bug
> (but I'm not
On Wednesday, November 2, 2011, Nathaniel Smith wrote:
> Hi Benjamin,
>
> On Wed, Nov 2, 2011 at 5:25 PM, Benjamin Root wrote:
>> I want to pare this down even more. I think the above lists makes too
many
>> unneeded extrapolations.
>
> Okay. I found your formatting a little confusing, so I want
Yes they pass:
Ran 2030 tests in 6.672s
OK (KNOWNFAIL=1)
Google "einsum hang" I know you're not the first one with this bug (but
I'm not sure exactly how to fix it).
-=- Olivier
2011/11/2 akshar bhosale
> my numpy.test hangs here
>
> Test whether equivalent subarray dtypes hash the same
my numpy.test hangs here
Test whether equivalent subarray dtypes hash the same. ... ok
Test whether different subarray dtypes hash differently. ... ok
Test some data types that are equal ... ok
Test some more complicated cases that shouldn't be equal ... ok
Test some simple cases that shouldn't be
hi,
on your machine, is numpy.test passed?
On Thu, Nov 3, 2011 at 6:54 AM, Olivier Delalleau wrote:
> I believe they are optional, but I'm not sure.
>
> Note that this system I copied the distutils from is not one I setup
> myself so I'm not sure how numpy was installed exactly. I just know it
>
Hi Benjamin,
On Wed, Nov 2, 2011 at 5:25 PM, Benjamin Root wrote:
> I want to pare this down even more. I think the above lists makes too many
> unneeded extrapolations.
Okay. I found your formatting a little confusing, so I want to make
sure I understood the changes you're suggesting:
For the
I believe they are optional, but I'm not sure.
Note that this system I copied the distutils from is not one I setup myself
so I'm not sure how numpy was installed exactly. I just know it works and
it's using MKL :) It's an 8 core Intel(R) Xeon(R) CPU E5462 @ 2.80GHz
(x86_64 as well).
-=- Olivier
hi,
are amd,fftw and umfpack required? my architecture is : intel xeon x_86_64.
On Thu, Nov 3, 2011 at 6:30 AM, Olivier Delalleau wrote:
> It's inside the distutils folder.
>
> -=- Olivier
>
> 2011/11/2 akshar bhosale
>
>> thanks..what about site.cfg?
>>
>> On Thu, Nov 3, 2011 at 1:27 AM, Olivi
It's inside the distutils folder.
-=- Olivier
2011/11/2 akshar bhosale
> thanks..what about site.cfg?
>
> On Thu, Nov 3, 2011 at 1:27 AM, Olivier Delalleau wrote:
>
>> Sorry, no clue :/
>>
>> I made a tarball with my distutils folder here:
>> http://www.iro.umontreal.ca/~delallea/tmp/distutils
thanks..what about site.cfg?
On Thu, Nov 3, 2011 at 1:27 AM, Olivier Delalleau wrote:
> Sorry, no clue :/
>
> I made a tarball with my distutils folder here:
> http://www.iro.umontreal.ca/~delallea/tmp/distutils.tar.bz2
> Hope this helps...
>
> -=- Olivier
>
> 2011/11/2 akshar bhosale
>
>> hi,
On Wed, Nov 2, 2011 at 6:37 PM, Nathaniel Smith wrote:
> Hi again,
>
> Okay, here's my attempt at an *uncontroversial* email!
>
> Specifically, I think it'll be easier to talk about this NA stuff if
> we can establish some common ground, and easier for people to follow
> if the basic points of ag
Hi again,
Okay, here's my attempt at an *uncontroversial* email!
Specifically, I think it'll be easier to talk about this NA stuff if
we can establish some common ground, and easier for people to follow
if the basic points of agreement are laid out in one place. So I'm
going to try and summarize
Sorry, no clue :/
I made a tarball with my distutils folder here:
http://www.iro.umontreal.ca/~delallea/tmp/distutils.tar.bz2
Hope this helps...
-=- Olivier
2011/11/2 akshar bhosale
> hi,
> thanks for the reply
> none of them is linked with libmkl_lapack.so.
> what can be the problem?
> libmkl
hi,
thanks for the reply
none of them is linked with libmkl_lapack.so.
what can be the problem?
libmkl_lapack.so is present in its location.
if possible, can you send your site.cfg and other related files like
intelccompilers.py / system_config.py etc...and configure/build options, i
will try the
Hmm that's interesting, it's not linked against libmkl_lapack. On my system
with MKL it says:
ldd linalg/lapack_lite.so
libmkl_lapack.so => /opt/intel/mkl/
10.1.3.027/lib/em64t/libmkl_lapack.so (0x2acf0e25a000)
libmkl_intel_lp64.so => /opt/intel/mkl/
10.1.3.027/lib/em64t/libmkl
Hi,
ldd Python-2.6/lib/python2.6/site-packages/numpy/linalg/lapack_lite.so
libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x2b1199349000)
libmkl_def.so =>
/opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_def.so
(0x2b1199653000)
libmkl_intel_lp64.so =>
/opt/intel/Compiler/11.0/06
Doh I'm sorry, I forgot the problem was with lapack, what about ldd
numpy/linalg/lapack_lite.so?
2011/11/2 akshar bhosale
> Hi,
> ldd _dotblas.so
> libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x2b12f0692000)
> libmkl_def.so =>
> /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_def.so
>
Hi,
ldd _dotblas.so
libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x2b12f0692000)
libmkl_def.so =>
/opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_def.so
(0x2b12f099c000)
libmkl_intel_lp64.so =>
/opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_intel_lp64.so
(0x2b12f14f1000)
Ok, can you print the output of ldd numpy/core/_dotblas.so?
-=- Olivier
2011/11/2 akshar bhosale
> HI,
> It is already added in the LD_LIBRARY_PATH, thenalso it is generating the
> same error.
>
>
> On Wed, Nov 2, 2011 at 10:01 PM, Olivier Delalleau wrote:
>
>> Locate your libmkl_lapack.so and
HI,
It is already added in the LD_LIBRARY_PATH, thenalso it is generating the
same error.
On Wed, Nov 2, 2011 at 10:01 PM, Olivier Delalleau wrote:
> Locate your libmkl_lapack.so and try to add the directory that contains it
> to your LD_LIBRARY_PATH environment variable.
>
> -=- Olivier
>
> 201
Locate your libmkl_lapack.so and try to add the directory that contains it
to your LD_LIBRARY_PATH environment variable.
-=- Olivier
2011/11/2 akshar bhosale
> Hi,
>
> i am getting following error.
>python -c 'import numpy;numpy.matrix([[1, 5, 10], [1.0, 3j, 4]],
>numpy.complex128).T.I.
Hi,
i am getting following error.
python -c 'import numpy;numpy.matrix([[1, 5, 10], [1.0, 3j, 4]],
numpy.complex128).T.I.H'
MKL FATAL ERROR: Cannot load libmkl_lapack.so
have installed numpy 1.6.0 with python 2.6.
i have intel cluster toolkit installed on my system. (11/069 version
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