It's inside the distutils folder. -=- Olivier
2011/11/2 akshar bhosale <[email protected]> > thanks..what about site.cfg? > > On Thu, Nov 3, 2011 at 1:27 AM, Olivier Delalleau <[email protected]> wrote: > >> Sorry, no clue :/ >> >> I made a tarball with my distutils folder here: >> http://www.iro.umontreal.ca/~delallea/tmp/distutils.tar.bz2 >> Hope this helps... >> >> -=- Olivier >> >> 2011/11/2 akshar bhosale <[email protected]> >> >>> hi, >>> thanks for the reply >>> none of them is linked with libmkl_lapack.so. >>> what can be the problem? >>> libmkl_lapack.so is present in its location. >>> >>> if possible, can you send your site.cfg and other related files like >>> intelccompilers.py / system_config.py etc...and configure/build options, i >>> will try the same? >>> >>> On Wed, Nov 2, 2011 at 11:51 PM, Olivier Delalleau <[email protected]>wrote: >>> >>>> Hmm that's interesting, it's not linked against libmkl_lapack. On my >>>> system with MKL it says: >>>> >>>> ldd linalg/lapack_lite.so >>>> libmkl_lapack.so => /opt/intel/mkl/*MailScanner soupçonne le >>>> lien suivant d'être une tentative de fraude de la part de "10.1.3.027" >>>> * *MailScanner warning: numerical links are often malicious: >>>> 10.1.3.027/lib/em64t/libmkl_lapack.so*<http://10.1.3.027/lib/em64t/libmkl_lapack.so>(0x00002acf0e25a000) >>>> libmkl_intel_lp64.so => /opt/intel/mkl/*MailScanner soupçonne >>>> le lien suivant d'être une tentative de fraude de la part de "10.1.3.027" >>>> * *MailScanner warning: numerical links are often malicious: >>>> 10.1.3.027/lib/em64t/libmkl_intel_lp64.so*<http://10.1.3.027/lib/em64t/libmkl_intel_lp64.so>(0x00002acf0ebb8000) >>>> libmkl_intel_thread.so => /opt/intel/mkl/*MailScanner >>>> soupçonne le lien suivant d'être une tentative de fraude de la part de >>>> "10.1.3.027" * *MailScanner warning: numerical links are often >>>> malicious: >>>> 10.1.3.027/lib/em64t/libmkl_intel_thread.so*<http://10.1.3.027/lib/em64t/libmkl_intel_thread.so>(0x00002acf0ef2e000) >>>> libmkl_def.so => /opt/intel/mkl/*MailScanner soupçonne le lien >>>> suivant d'être une tentative de fraude de la part de "10.1.3.027" * >>>> *MailScanner >>>> warning: numerical links are often malicious: >>>> 10.1.3.027/lib/em64t/libmkl_def.so*<http://10.1.3.027/lib/em64t/libmkl_def.so>(0x00002acf0fc93000) >>>> libmkl_core.so => /opt/intel/mkl/*MailScanner soupçonne le >>>> lien suivant d'être une tentative de fraude de la part de "10.1.3.027" >>>> * *MailScanner warning: numerical links are often malicious: >>>> 10.1.3.027/lib/em64t/libmkl_core.so*<http://10.1.3.027/lib/em64t/libmkl_core.so>(0x00002acf1080e000) >>>> >>>> libguide.so => /opt/intel/cce/10.1.026/lib/libguide.so >>>> (0x00002acf10a03000) >>>> libpthread.so.0 => /lib64/libpthread.so.0 (0x00002acf10ba6000) >>>> libm.so.6 => /lib64/libm.so.6 (0x00002acf10dc1000) >>>> libpython2.6.so.1.0 => >>>> /opt/python64/2.6.4/lib/libpython2.6.so.1.0 (0x00002acf11044000) >>>> libc.so.6 => /lib64/libc.so.6 (0x00002acf113f3000) >>>> libdl.so.2 => /lib64/libdl.so.2 (0x00002acf1174b000) >>>> /lib64/ld-linux-x86-64.so.2 (0x0000003d90400000) >>>> libutil.so.1 => /lib64/libutil.so.1 (0x00002acf1194f000) >>>> >>>> So to clarify, what I was trying to achieve is find which of numpy's >>>> shared libraries was trying to load libmkl_lapack.so, and if it could be >>>> found properly with ldd. Just to make sure it's not another .so, can you >>>> run from within your numpy directory: >>>> find -name "*.so" -exec ldd \{} \; | grep lapack >>>> >>>> If the output is not empty, try to run ldd on all .so within numpy to >>>> see which one is linked against libmkl_lapack.so. Then hopefully something >>>> will stand out (I admit that's not guaranteed though ;). >>>> >>>> >>>> -=- Olivier >>>> >>>> 2011/11/2 akshar bhosale <[email protected]> >>>> >>>>> Hi, >>>>> >>>>> ldd Python-2.6/lib/python2.6/site-packages/numpy/linalg/lapack_lite.so >>>>> libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x00002b1199349000) >>>>> libmkl_def.so => >>>>> /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_def.so >>>>> (0x00002b1199653000) >>>>> libmkl_intel_lp64.so => >>>>> /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_intel_lp64.so >>>>> (0x00002b119a1a8000) >>>>> libmkl_intel_thread.so => >>>>> /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_intel_thread.so >>>>> (0x00002b119a503000) >>>>> libmkl_core.so => >>>>> /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_core.so >>>>> (0x00002b119b22c000) >>>>> libmkl_mc.so => >>>>> /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_mc.so >>>>> (0x00002b119b420000) >>>>> libpthread.so.0 => /lib64/libpthread.so.0 (0x00002b119c176000) >>>>> libimf.so => /opt/intel/Compiler/11.0/069/lib/intel64/libimf.so >>>>> (0x00002b119c392000) >>>>> libsvml.so => /opt/intel/Compiler/11.0/069/lib/intel64/libsvml.so >>>>> (0x00002b119c6e9000) >>>>> libm.so.6 => /lib64/libm.so.6 (0x00002b119c8a6000) >>>>> libiomp5.so => >>>>> /opt/intel/Compiler/11.0/069/lib/intel64/libiomp5.so (0x00002b119cb2b000) >>>>> libintlc.so.5 => >>>>> /opt/intel/Compiler/11.0/069/lib/intel64/libintlc.so.5 >>>>> (0x00002b119ccbc000) >>>>> libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00002b119cdf9000) >>>>> libc.so.6 => /lib64/libc.so.6 (0x00002b119d007000) >>>>> libdl.so.2 => /lib64/libdl.so.2 (0x00002b119d37e000) >>>>> /lib64/ld-linux-x86-64.so.2 (0x0000003fb8000000) >>>>> >>>>> >>>>> >>>>> On Wed, Nov 2, 2011 at 11:26 PM, Olivier Delalleau <[email protected]>wrote: >>>>> >>>>>> Doh I'm sorry, I forgot the problem was with lapack, what about ldd >>>>>> numpy/linalg/lapack_lite.so? >>>>>> >>>>>> >>>>>> 2011/11/2 akshar bhosale <[email protected]> >>>>>> >>>>>>> Hi, >>>>>>> ldd _dotblas.so >>>>>>> libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x00002b12f0692000) >>>>>>> libmkl_def.so => >>>>>>> /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_def.so >>>>>>> (0x00002b12f099c000) >>>>>>> libmkl_intel_lp64.so => >>>>>>> /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_intel_lp64.so >>>>>>> (0x00002b12f14f1000) >>>>>>> libmkl_intel_thread.so => >>>>>>> /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_intel_thread.so >>>>>>> (0x00002b12f184c000) >>>>>>> libmkl_core.so => >>>>>>> /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_core.so >>>>>>> (0x00002b12f2575000) >>>>>>> libmkl_mc.so => >>>>>>> /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_mc.so >>>>>>> (0x00002b12f2769000) >>>>>>> libpthread.so.0 => /lib64/libpthread.so.0 (0x00002b12f34bf000) >>>>>>> libimf.so => /opt/intel/Compiler/11.0/069/lib/intel64/libimf.so >>>>>>> (0x00002b12f36db000) >>>>>>> libsvml.so => >>>>>>> /opt/intel/Compiler/11.0/069/lib/intel64/libsvml.so (0x00002b12f3a32000) >>>>>>> libm.so.6 => /lib64/libm.so.6 (0x00002b12f3bef000) >>>>>>> libiomp5.so => >>>>>>> /opt/intel/Compiler/11.0/069/lib/intel64/libiomp5.so >>>>>>> (0x00002b12f3e74000) >>>>>>> libintlc.so.5 => >>>>>>> /opt/intel/Compiler/11.0/069/lib/intel64/libintlc.so.5 >>>>>>> (0x00002b12f4005000) >>>>>>> libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00002b12f4142000) >>>>>>> libc.so.6 => /lib64/libc.so.6 (0x00002b12f4350000) >>>>>>> libdl.so.2 => /lib64/libdl.so.2 (0x00002b12f46c7000) >>>>>>> /lib64/ld-linux-x86-64.so.2 (0x0000003fb8000000) >>>>>>> >>>>>>> >>>>>>> >>>>>>> On Wed, Nov 2, 2011 at 10:14 PM, Olivier Delalleau <[email protected]>wrote: >>>>>>> >>>>>>>> Ok, can you print the output of ldd numpy/core/_dotblas.so? >>>>>>>> >>>>>>>> >>>>>>>> -=- Olivier >>>>>>>> >>>>>>>> 2011/11/2 akshar bhosale <[email protected]> >>>>>>>> >>>>>>>>> HI, >>>>>>>>> It is already added in the LD_LIBRARY_PATH, thenalso it is >>>>>>>>> generating the same error. >>>>>>>>> >>>>>>>>> >>>>>>>>> On Wed, Nov 2, 2011 at 10:01 PM, Olivier Delalleau >>>>>>>>> <[email protected]>wrote: >>>>>>>>> >>>>>>>>>> Locate your libmkl_lapack.so and try to add the directory that >>>>>>>>>> contains it to your LD_LIBRARY_PATH environment variable. >>>>>>>>>> >>>>>>>>>> -=- Olivier >>>>>>>>>> >>>>>>>>>> 2011/11/2 akshar bhosale <[email protected]> >>>>>>>>>> >>>>>>>>>>> Hi, >>>>>>>>>>> >>>>>>>>>>> i am getting following error. >>>>>>>>>>> python -c 'import numpy;numpy.matrix([[1, 5, 10], [1.0, 3j, >>>>>>>>>>> 4]], >>>>>>>>>>> numpy.complex128).T.I.H' >>>>>>>>>>> MKL FATAL ERROR: Cannot load libmkl_lapack.so >>>>>>>>>>> >>>>>>>>>>> have installed numpy 1.6.0 with python 2.6. >>>>>>>>>>> i have intel cluster toolkit installed on my system. (11/069 >>>>>>>>>>> version and mlk=10.1). i have machine having intel xeon processor >>>>>>>>>>> and rhel >>>>>>>>>>> 5.2 x86_64 >>>>>>>>>>> platform. >>>>>>>>>>> Kindly help >>>>>>>>>>> >>>>>>>>>>> _______________________________________________ >>>>>>>>>>> NumPy-Discussion mailing list >>>>>>>>>>> [email protected] >>>>>>>>>>> http://mail.scipy.org/mailman/listinfo/numpy-discussion >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>> >>>>>>>>>> _______________________________________________ >>>>>>>>>> NumPy-Discussion mailing list >>>>>>>>>> [email protected] >>>>>>>>>> http://mail.scipy.org/mailman/listinfo/numpy-discussion >>>>>>>>>> >>>>>>>>>> >>>>>>>>> >>>>>>>>> _______________________________________________ >>>>>>>>> NumPy-Discussion mailing list >>>>>>>>> [email protected] >>>>>>>>> http://mail.scipy.org/mailman/listinfo/numpy-discussion >>>>>>>>> >>>>>>>>> >>>>>>>> >>>>>>>> _______________________________________________ >>>>>>>> NumPy-Discussion mailing list >>>>>>>> [email protected] >>>>>>>> http://mail.scipy.org/mailman/listinfo/numpy-discussion >>>>>>>> >>>>>>>> >>>>>>> >>>>>>> _______________________________________________ >>>>>>> NumPy-Discussion mailing list >>>>>>> [email protected] >>>>>>> http://mail.scipy.org/mailman/listinfo/numpy-discussion >>>>>>> >>>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> NumPy-Discussion mailing list >>>>>> [email protected] >>>>>> http://mail.scipy.org/mailman/listinfo/numpy-discussion >>>>>> >>>>>> >>>>> >>>>> _______________________________________________ >>>>> NumPy-Discussion mailing list >>>>> [email protected] >>>>> http://mail.scipy.org/mailman/listinfo/numpy-discussion >>>>> >>>>> >>>> >>>> _______________________________________________ >>>> NumPy-Discussion mailing list >>>> [email protected] >>>> http://mail.scipy.org/mailman/listinfo/numpy-discussion >>>> >>>> >>> >>> _______________________________________________ >>> NumPy-Discussion mailing list >>> [email protected] >>> http://mail.scipy.org/mailman/listinfo/numpy-discussion >>> >>> >> >> _______________________________________________ >> NumPy-Discussion mailing list >> [email protected] >> http://mail.scipy.org/mailman/listinfo/numpy-discussion >> >> > > _______________________________________________ > NumPy-Discussion mailing list > [email protected] > http://mail.scipy.org/mailman/listinfo/numpy-discussion > >
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