Bug#1064726: follow-up bug filed

2024-10-18 Thread Olivier Tilloy
I filed bug #1085385 to track the FTBFS with Python 3.12.

Bug#1085385: 0ad: FTBFS with Python 3.12

2024-10-18 Thread Olivier Tilloy
Package: 0ad Version: 0.0.26-5 Severity: serious Tags: ftbfs Justification: fails to build from source (but built successfully in the past) X-Debbugs-Cc: oliv...@tilloy.net Dear Maintainer, This is a follow-up bug to #1064726. 0ad fails to build from source on testing and unstable. This is mostly

Bug#1073819: minizinc-ide: Error at runtime on current testing/sid version.

2024-06-19 Thread Olivier Boutin
inition of a global constraint, override "fzn_.mzn" instead. Warning: included file "diffn.mzn" overrides a global constraint file from the standard library. This is deprecated. For a solver-specific redefinition of a global constraint, override "fzn_.mzn" instead. Warnin

Bug#1059245: gdm3: GDM3 fails to start on Wayland, maybe due to org.freedesktop.systemd1 failing to activate

2024-04-22 Thread Olivier Mehani
Package: gdm3 Version: 45.0.1-3 Followup-For: Bug #1059245 Dear Maintainer, I have just had the same bug happen on a different machine after an upgrade. See attached apt history for the differences in packages before/after the issue appeared. *** Reporter, please consider answering these que

Bug#1058392: python-oauth2client: FTBFS: failed tests

2024-02-16 Thread Olivier Gayot
assertRaisesRegex. + In Python 3.12, the deprecated names got dropped, causing oauth2client to + FTBFS. + . + The patch is not meant for upstream inclusion since the project upstream is + deprecated (in favor of python-google-auth) and the repository is read only. +Author: Olivier Gayot +Bug-Debian: ht

Bug#1059245: gdm3: GDM3 fails to start on Wayland, maybe due to org.freedesktop.systemd1 failing to activate

2023-12-26 Thread Olivier Mehani
Package: gdm3 Version: 45.0.1-2 Followup-For: Bug #1059245 Thanks for the reply, Simon. I have done some more investigation, comparing to a freshly installed VM, and see this difference in the debug logs of gdm-wayland-session, which seems to be what misbehaves in my previous logs. $ sudo jo

Bug#1059245: gdm3: GDM3 fails to start on Wayland, maybe due to org.freedesktop.systemd1 failing to activate

2023-12-21 Thread Olivier Mehani
Package: gdm3 Version: 45.0.1-1 Severity: grave Justification: renders package unusable Dear Maintainer, GDM3 doesn't seem to be able to start a Wayland session (nor a fallback Xorg session, but I'm less concerned about this, and this seems to be a separate permission issue). This seems to be r

Bug#1057967: Fixed - Was: Re: Bug#1057967: linux-image-6.1.0-15-amd64 renders my physical bookworm/gnome computer largely unusable

2023-12-12 Thread Olivier Berger
ks a lot. Best regards, -- Olivier BERGER (OpenPGP: 4096R/7C5BB6A5) http://www.olivierberger.com/weblog/

Bug#1054533: nvme-stas: autopkgtest fails on all architectures

2023-11-27 Thread Olivier Gayot
modules + before executing the test. +Author: Olivier Gayot +Origin: upstream, https://github.com/linux-nvme/nvme-stas/commit/2efebdb4dec6d5a6341a577273a1ce7b57fe488c +Bug-Ubuntu: https://launchpad.net/bugs/2043792 +Bug-Debian: https://bugs.debian.org/1054533 +Last-Update: 2023-11-27 +--- +This patch

Bug#1054533: nvme-stas: autopkgtest fails on all architectures

2023-11-17 Thread Olivier Gayot
t of the autopkgtest: * mkdir --parents /etc/nvme * systemctl start stas-config@hostnqn * systemctl start stas-config@hostid That said, I suggest we look for a solution that also resolves the issue outside of autopkgtests. Would introducing a Depends on nvme-cli be a bad thing? Kind regards, Olivier

Bug#1056018: partman-base: parted_devices hangs with process in D state during Debian installer Detect Disks step

2023-11-15 Thread Olivier F. R. Dierick
Source: partman-base Version: 226 Severity: critical Tags: d-i Justification: breaks the whole system Dear Maintainer, * What led up to the situation? Updating from Debian 8 to Debian 12 from an USB stick. * What exactly did you do (or not do) that was effective (or ineffective)? In

Bug#1040801: mcomix: pillow 10.0.0 not recognized as higher than 6.0.0

2023-08-06 Thread Olivier Allard-Jacquin
With this modification, mcomix work fine. Real python developers, or packagers should provide a better and more python-style than me ! :) Best regards, Olivier

Bug#1040566: let logol be removed

2023-07-18 Thread olivier sallou
Le mer. 19 juil. 2023, 06:58, Andreas Tille a écrit : > Hi Olivier, > > Am Mon, Jul 17, 2023 at 12:13:30PM +0200 schrieb olivier sallou: > > logol is not maintained anymore for quite some time now > > > > effort to keep in line with swi-prolog updates (need to recompi

Bug#1040566: biojava not shipping biojava.jar anymore

2023-07-17 Thread olivier sallou
seems biojava now ships several jar files (core, biosql, ...) and not a bundle anymore, used by logol, see list of jar files available: https://packages.debian.org/sid/all/libbiojava1.9-java/filelist would need to patch logol to import/load expected jar files (and find which ones are needed...) i

Bug#1040566: let it be removed

2023-07-17 Thread olivier sallou
logol is not maintained anymore for quite some time now effort to keep in line with swi-prolog updates (need to recompile on each ABI break of swi-prolog) AND biojava requires frequent work for an old software with low usage. I would let it be removed -- gpg key id: 4096R/326D8438 (keyrin

Bug#1031046: Asterisk packaging

2023-06-02 Thread Olivier
Hello, I lately discovered this thread. I volunteer to help to package Asterisk either in current official Debian repo or in an alternative repository. The perspectives of Asterisk Deb packaging is talked about in [1] (I'm the original author of this thread). One thing that comes to mind readin

Bug#1013395: mpdecimal: FTBFS with Sphinx 5.0, docutils 0.18: make[1]: *** [debian/rules:60: override_dh_sphinxdoc] Error 255

2023-02-03 Thread Olivier Gayot
o I don't know how likely we will find out. [1] https://www.bytereef.org/mpdecimal/mailinglists.html Olivier

Bug#1026492: seqan2: FTBFS: TypeError: a bytes-like object is required, not 'str'

2022-12-21 Thread olivier sallou
On Wed, 2022-12-21 at 19:39 +0530, Nilesh Patra wrote: > On Wed, 21 Dec 2022 12:32:25 +0100 olivier sallou > wrote: > > On Wed, 2022-12-21 at 11:02 +0100, olivier sallou wrote: > > > looks like a python3 issue (though was already adapter to py3...) > > > > &

Bug#1026492: seqan2: FTBFS: TypeError: a bytes-like object is required, not 'str'

2022-12-21 Thread olivier sallou
upstream, in develop branch has disabled mason2 testing for gcc > 10 , don't know why, but let's do the same as it is the one failing now with indeed superior gcc I am adapting the patch and testing again. gpg key id: 4096R/326D8438  (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 520

Bug#1026492: seqan2: FTBFS: TypeError: a bytes-like object is required, not 'str'

2022-12-21 Thread olivier sallou
I pushed a patch d/patches/fix_python3_tests whic fixes almost all test issues(python3 related) BUT remains a failing test with mason2 which is not related to py3 issue (no bytes-like error) after build, can be reproduced with in a temp dir: python3 /<>/apps/mason2/tests/run_tests.py /opt/d

Bug#1026492: seqan2: FTBFS: TypeError: a bytes-like object is required, not 'str'

2022-12-21 Thread olivier sallou
On Wed, 2022-12-21 at 11:02 +0100, olivier sallou wrote: > looks like a python3 issue (though was already adapter to py3...) > > will have a look and reproduce I could reproduce and found an issue with demo_checker.py handling with python3 I have a patch. will test it and upload >

Bug#1026492: seqan2: FTBFS: TypeError: a bytes-like object is required, not 'str'

2022-12-21 Thread olivier sallou
looks like a python3 issue (though was already adapter to py3...) will have a look and reproduce Olivier -- gpg key id: 4096R/326D8438  (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335  D26D 78DC 68DB 326D 8438

Bug#1026056: swi-prolog breaks logol autopkgtest: Program exited with wrong status code

2022-12-14 Thread olivier sallou
after investigation, logol does not find anymore libswipl.so.8, need version providing .so.9 compiled program link to .so.x versions, forcing package recompilation Le mar. 13 déc. 2022 à 22:03, Paul Gevers a écrit : > Source: swi-prolog, logol > Control: found -1 swi-prolog/9.0.2+dfsg-1 > Contr

Bug#1026056: swi-prolog breaks logol autopkgtest: Program exited with wrong status code

2022-12-13 Thread olivier sallou
Tests need to be run as root, or use a specific config file and use non root writable directories. Will try to change tests to do so. Regarding issue itself, programs compiled by swi prolog usually require recompilation on swi prolog updates. Will try to rebuild and check Le mar. 13 déc. 2022,

Bug#1022253: swi-prolog breaks logol autopkgtest on s390x

2022-10-23 Thread olivier sallou
Le dim. 23 oct. 2022, 19:21, Lev Lamberov a écrit : > Hi Paul, > > Вс 23 окт 2022 @ 10:10 Paul Gevers : > > > Hi Lev, > > > > On 23-10-2022 09:40, Lev Lamberov wrote: > >> I'm not sure it is the solution, it needs testing. The change in > >> swi-prolog concerns pre-compiled prolog source code, wh

Bug#1020081: aft: FTBFS: make: *** [debian/rules:47: binary-indep] Error 25

2022-10-12 Thread Olivier Gayot
Package: aft Followup-For: Bug #1020081 User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu kinetic ubuntu-patch Control: tags -1 patch Dear Maintainer, The last upload of aft changed the format of a doc file from HTML to RTF. The packaging was not updated accordingly. This prevents the

Bug#1014797: FTBFS: test failures with new libgd3

2022-09-30 Thread olivier sallou
Le ven. 30 sept. 2022 à 07:20, Andreas Tille a écrit : > Am Fri, Sep 30, 2022 at 02:20:26AM +0200 schrieb olivier sallou: > > Will try to have a look, but i have no perl knowledge and software is > quite > > old now... > I have a patch. With this patch, tests are ok, but

Bug#1014797: FTBFS: test failures with new libgd3

2022-09-29 Thread olivier sallou
Will try to have a look, but i have no perl knowledge and software is quite old now... Le jeu. 29 sept. 2022, 19:44, Andreas Tille a écrit : > Control: tags -1 help > > Hi Aaron and Olivier, > > do you have some idea how to fix this bug? > > Kind regards > > A

Bug#1004579: mplayer: FTBFS with ffmpeg 5.0

2022-08-19 Thread Olivier Gayot
Package: mplayer Version: 2:1.4+ds1-3 Followup-For: Bug #1004579 User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu kinetic ubuntu-patch Control: tags -1 patch Dear Maintainer, The upstream release 1.5 supports ffmpeg 5 and would solve this issue. In the meantime, I have attempted to bac

Bug#1013577: [Debian-med-packaging] Bug#1013577: picard-tools: FTBFS: PicardHelpDocWorkUnitHandler.java:6: error: cannot find symbol

2022-06-24 Thread olivier sallou
Nati > > veMethodAccessorImpl.java:62) > > at > > java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke( > > DelegatingMethodAccessorImpl.java:43) > > at > > org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:73) > > at > > org.gradle.api.internal.project.taskfa

Bug#1006384: closed by Debian FTP Masters (reply to Olivier Sallou ) (Bug#1006384: fixed in logol 1.7.9+dfsg-2)

2022-03-03 Thread olivier sallou
ed logol in sid recompiled with the new abi. However, with lev info, i should add for later updates the swi-prolog-binary-68 dependency. Swi prolog needs to move to testing before updated logol. Olivier > Paul > > >

Bug#1006384: swi-prolog breaks logol autopkgtest: Program exited with wrong status code

2022-03-01 Thread olivier sallou
Le lun. 28 févr. 2022 à 06:37, a écrit : > Dear Olivier, > > sorry for the delay with my message and thanks for your input. > > olivier sallou писал 2022-02-25 12:12: > > ok, > > after a quick look, issue is Logol is compiled against swi-prolog, and > > there

Bug#1006384: swi-prolog breaks logol autopkgtest: Program exited with wrong status code

2022-02-24 Thread olivier sallou
go, and logol in sid won't either go to testing because will need swi-prolog version from sid...) Olivier Le jeu. 24 févr. 2022 à 19:36, Paul Gevers a écrit : > Source: swi-prolog, logol > Control: found -1 swi-prolog/8.4.2+dfsg-2 > Control: found -1 logol/1.7.9+dfsg-1 > Seve

Bug#1006384: swi-prolog breaks logol autopkgtest: Program exited with wrong status code

2022-02-24 Thread olivier sallou
Hi, Logol is not maintained for quite a long time now, i will try to have a look, but i am ok to get logol removed from testing to avoid blocking swi prolog Olivier Le jeu. 24 févr. 2022, 19:36, Paul Gevers a écrit : > Source: swi-prolog, logol > Control: found -1 swi-prolog/8.4.2+

Bug#1005457: biomaj3-download: FTBFS: ValueError: Error while parsing stop condition: stop_after_attempt(3) doesn't yield a stop condition

2022-02-13 Thread olivier sallou
Seems that a dependency (tenacity) has been changed with broken api Need to change code to use new tenacity version Le dim. 13 févr. 2022, 08:21, Lucas Nussbaum a écrit : > Source: biomaj3-download > Version: 3.2.4-1 > Severity: serious > Justification: FTBFS > Tags: bookworm sid ftbfs > User:

Bug#998108: firefox freezes shortly after start

2021-10-30 Thread Olivier Allard-Jacquin
also fix issue. Best regards, Olivier

Bug#997880: lebiniou-data: autopkgtest regression: delta with reference data

2021-10-27 Thread Olivier Girondel
working anymore. Regards, -- Olivier Girondel

Bug#995644: lebiniou: Fails to upgrade: trying to overwrite '/usr/share/lebiniou/etc/schemes.json'

2021-10-11 Thread Olivier Girondel
ses (e.g: non debian-based systems) the schemes.json should be part of lebiniou, not lebiniou-data. Thanks for your answers, Best regards, -- Olivier

Bug#992919: lebiniou: Upgrade fails: trying to overwrite '/usr/share/lebiniou/etc/schemes.json', which is also in package lebiniou-data 3.54.1-1

2021-08-27 Thread Olivier Girondel
Hi Axel, Thanks for spotting this. I just filed #993092 to address this issue. Regards, -- Olivier Girondel

Bug#988650: logol: broken symlink: /usr/share/logol/lib/xml-apis.jar -> ../../java/xml-apis.jar

2021-05-17 Thread olivier sallou
why but it breaks logol. Fix would be to symlink to versioned jar, but will break on next libxml-commons-external-java update. Could certainly be scripted to get related version and link to this version file. Olivier Le lun. 17 mai 2021 à 14:05, Andreas Tille a écrit : > Hi, > > I'

Bug#988650: logol: broken symlink: /usr/share/logol/lib/xml-apis.jar -> ../../java/xml-apis.jar

2021-05-17 Thread olivier sallou
Issue seems to be related to xml-apis.jar not being symlinked itself /usr/share/java# ls *xml-api* xml-apis-1.4.01.jar xml-apis-ext-1.4.01.jar xml-apis-ext.jar Usually, java libs have a versioned file and an unversionned file which is a symlink to versioned one (see above). xml-apis here is not

Bug#988650: logol: broken symlink: /usr/share/logol/lib/xml-apis.jar -> ../../java/xml-apis.jar

2021-05-17 Thread olivier sallou
need to check, but I suppose referenced lib changed its path or name in dependencies... Le lun. 17 mai 2021 à 13:33, Andreas Beckmann a écrit : > Package: logol > Version: 1.7.9-2 > Severity: serious > User: debian...@lists.debian.org > Usertags: piuparts > > Hi, > > during a test with piuparts

Bug#973070: [Debian-med-packaging] Bug#973070: Help needed: Bug#973070: libsis-base-java: FTBFS: Could not delete the directory targets/unit-test-wd/ch.systemsx.cisd.base.unix.UnixTests because: 1 exc

2020-10-28 Thread olivier sallou
e to delete file: > targets/unit-test- > wd/ch.systemsx.cisd.base.unix.UnixTests/someDanglingLink] > Exception in thread "main" org.apache.commons.io.IOExceptionList: 1 > exceptions: [java.io.IOException: Unable to delete file: > targets/unit-test- > wd/ch.systemsx.cisd.b

Bug#972511: nvidia-legacy-390xx-driver: DKMS module build fail ioctl32.h not found

2020-10-24 Thread Olivier Allard-Jacquin
ards, Olivier

Bug#877740: gedit-latex-plugin: Depends: gvfs-bin, which contains only deprecated tools

2020-09-17 Thread Olivier Tilloy
The following merge request applies the relevant upstream commit as a patch to relax the dependency on gvfs-bin: https://salsa.debian.org/debian/gedit-latex-plugin/-/merge_requests/1

Bug#963771: nodejs breaks node-immutable-tuple autopkgtest: can handle a lot of strings: AssertionError

2020-07-14 Thread Olivier Tilloy
An upstream change in Node.js is causing this test failure: https://github.com/nodejs/node/commit/a0f338ecc1 The solution is to remove the offending test: https://salsa.debian.org/js-team/node-immutable-tuple/-/merge_requests/1

Bug#963061: nodejs breaks node-grunt-contrib-nodeunit autopkgtest: 1/24 assertions failed

2020-07-14 Thread Olivier Tilloy
This failure is caused by an unidentified change in upstream Node.js which results in a test's output not being wrapped as expected. Simply modifying that test to add some more data so that its output is wrapped does the trick: https://salsa.debian.org/js-team/node-grunt-contrib-nodeunit/-/merge_r

Bug#963063: nodejs breaks node-diff autopkgtest: Failed test: 41

2020-07-10 Thread Olivier Tilloy
The failure is caused by this change in v8, which was imported in the new Node.js: https://chromium-review.googlesource.com/c/v8/v8/+/1433776 The message of the error that is thrown when attempting to convert a structure with circular references to JSON has been enhanced to include the constructo

Bug#963430: Any volunteer to spent some time on the new version of artemis (Was: Bug#963430: artemis: FTBFS: /bin/sh: 1: /usr/share/java/j2ssh-core.jar: Permission denied)

2020-06-23 Thread olivier sallou
me to manage this for now but will gladly help if possible. Olivier > > Cheers! > Emmanuel > > > > > > Cheers, > Arias Emmanuel > @eamanu > yaerobi.com > > > On Mon, Jun 22, 2020 at 9:17 AM Andreas Tille > wrote: > > Hi, > > &g

Bug#956190: dh-python's autopkg tests fail with python3.8 as the only supported python3 version

2020-06-19 Thread Olivier Tilloy
This is fixed with https://salsa.debian.org/python-team/tools/dh-python/-/commit/e289c25c861ae65ae9e7b52ebc09cf1f56061fa7, but that version hasn't been released yet.

Bug#960756: [Debian-med-packaging] Bug#960756: python-biopython FTBFS on 32bit: test_NCBI_BLAST_tools.BlastDB failures

2020-06-09 Thread olivier sallou
e issue as it is related to memory management but will work on relatively *small* jobs, so software is ~OK 'till a certain point. Olivier > > Thanks for calling this report to my attention! > > -- > Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) > http://www

Bug#961841: fontforge FTBFS on 64bit big endian: test failures

2020-06-05 Thread Olivier Tilloy
It appears that upstream commit was already cherry-picked in https://salsa.debian.org/fonts-team/fontforge/-/commit/ad2b5f648241de5920a6f7f738dea091290a0af0, so all it needs is a release (and ideally a mention to this bug in the changelog next to the "add patches cherry-picked upstream to fix a ran

Bug#961841: fontforge FTBFS on 64bit big endian: test failures

2020-06-04 Thread Olivier Tilloy
This upstream commit fixes the test failures on s390x: https://github.com/oSoMoN/fontforge/commit/fde85b13382595cb3ab889e38570b4944edad808 . I cherry-picked it and applied it to 1:20190801~dfsg-5 (only the last hunk doesn't apply cleanly, it can be removed), and the build succeeded on amd64, arm64

Bug#961602: castle-game-engine-doc: Depends on removed ttf-dejavu packages

2020-06-04 Thread Olivier Tilloy
Submitted patch in the VCS: https://salsa.debian.org/pascal-team/castle-game-engine/-/merge_requests/1

Bug#961863: zatacka: Depends/Build-Depends on cruft package ttf-dejavu-core

2020-06-04 Thread Olivier Tilloy
Patch submitted to the VCS: https://github.com/alexdantas/zatacka.debian/pull/3

Bug#961700: picard-tools build depends on the removed libguava-java-doc

2020-05-28 Thread olivier sallou
Le jeu. 28 mai 2020 à 13:00, Andreas Tille a écrit : > Hi Olivier and Vincent > > On Thu, May 28, 2020 at 09:47:37AM +0300, Adrian Bunk wrote: > > > > picard-tools build depends on libguava-java-doc, > > which is no longer built by src:guava-libraries. > Hi andrea

Bug#961700: picard-tools build depends on the removed libguava-java-doc

2020-05-28 Thread olivier sallou
Le jeu. 28 mai 2020 à 13:00, Andreas Tille a écrit : > Hi Olivier and Vincent > > On Thu, May 28, 2020 at 09:47:37AM +0300, Adrian Bunk wrote: > > > > picard-tools build depends on libguava-java-doc, > > which is no longer built by src:guava-libraries. > > I'

Bug#952208: python-ftputil

2020-03-04 Thread olivier sallou
Le mer. 4 mars 2020 à 16:38, eamanu a écrit : > Hi olivier, > > On 04/03/2020 12:13, olivier sallou wrote: > > Hi, > > I saw you started some work on python-ftputil to fix #952208. > > > > I just pushed to git repo a fix for that. > > I am a little conf

Bug#952208: python-ftputil

2020-03-04 Thread olivier sallou
default being master. Olivier

Bug#925797: pushed patch to git

2020-02-09 Thread olivier sallou
I pushed to git a patch that seems to fix the undefined ref to InitGoogle... Still need to test full build (very long...) Olivier

Bug#936797: cannot find way to use pbcommand API

2020-02-09 Thread olivier sallou
pbcommand in debian (latest from github) provide a different API, but pbcommand doc and README all show previous API example and show usage of get_pbparser function, but this method is not present anymore. It is not possible to *guess* what should be used instead. -- gpg key id: 4096R/326D843

Bug#936797: depends on pbcommand with a different api

2020-02-09 Thread olivier sallou
Tried to look at python3 port. However it depends on pbcommand, and pbcommand api is different from expected by kinetictools (means py2 version is broken). Trying to see how to use current pbcommand api, but looks quite different. Olivier

Bug#937258: ported and uploaded

2020-02-09 Thread olivier sallou
py3 fix sent and uploaded, by introduces new py3 packages, so in NEW queue for the moment

Bug#947367: closed by Olivier Girondel (Bug#947367: fixed in lebiniou 3.40-1)

2020-01-31 Thread Olivier Girondel
On 1/31/20 11:04 AM, Paul Gevers wrote: > Dear Olivier, > > On 24-01-2020 19:51, Debian Bug Tracking System wrote: >> Changes: >> lebiniou (3.40-1) unstable; urgency=low > > [] > >>* debian/tests/control: Fix Test-Command. (Closes: #947367) > &

Bug#942022: librsvg: FTBFS on ppc64el: assertion failed: bounds.x1 >= bounds.x0

2019-11-28 Thread Olivier Tilloy
Philip Chimento started preparing the 2.46 update and I continued the work, this is now ready for review and sponsoring: https://salsa.debian.org/gnome-team/librsvg/merge_requests/5

Bug#942022: librsvg: FTBFS on ppc64el: assertion failed: bounds.x1 >= bounds.x0

2019-11-22 Thread Olivier Tilloy
Note that ubuntu focal (current development version) has rustc 1.38, and librsvg 2.44.15 fails to build from source with it. The upstream project committed a fix to the 2.44 branch (https://gitlab.gnome.org/GNOME/librsvg/commit/de26c4d8), but they advise packaging 2.46 instead as 2.44 is EOL.

Bug#942322: Info received (sudo: CVE-2019-14287: Potential bypass of Runas user restrictions - Jessie)

2019-10-18 Thread Olivier Jaquemet
I saw that a sudo package update for Jessie (security) has been pushed since my last message. https://security-tracker.debian.org/tracker/DLA-1964-1 https://lists.debian.org/debian-lts-announce/2019/10/msg00022.html Thank you.

Bug#942322: sudo: CVE-2019-14287: Potential bypass of Runas user restrictions - Jessie

2019-10-17 Thread Olivier Jaquemet
sk of such major issue. Did I miss something ? Do you plan to backport the fix ? Thanks for your answer, Olivier PS : Thanks for the hard work on this gread distrib.

Bug#942404: discosnp: flaky autopkgtest: discoRes_k_31_c_auto_D_100_P_1_b_0_coherent.fa: No such file or directory

2019-10-16 Thread Olivier Sallou
rent.fa: No such file or > directory > *** Test: FAILURE on diff .fa > autopkgtest [08:02:15]: test run-unit-test: -------] > > > ___ > Debian-med-packaging mailing list > debian-med-packag...@alioth-lists.debian.net &g

Bug#905206: [Debian-med-packaging] Bug#905206: Seems to crash in fortran lib

2019-10-08 Thread Olivier Sallou
On 10/4/19 3:07 PM, Andreas Tille wrote: > Hi Olivier, > > On Fri, Oct 04, 2019 at 02:14:02PM +0200, olivier sallou wrote: >>> Program received signal SIGSEGV: Segmentation fault - invalid memory >>> reference. >> I really do not see what error could be. Maybe a

Bug#905206: Seems to crash in fortran lib

2019-10-04 Thread olivier sallou
> at ./snapfun_dir/prof.f:876 > #5 0x55a7ca3b0967 in prof > at ./snapfun_dir/prof.f:108 > #6 0x55a7ca39f25e in main > at ./snapfun_dir/prof.f:179 > Segmentation fault (core dumped) > > On Thu, Oct 3, 2019 at 12:35 PM olivier sallou wrote: > >> >> >> Le je

Bug#905206: Seems to crash in fortran lib

2019-10-03 Thread olivier sallou
Le jeu. 3 oct. 2019 à 12:08, Michael Crusoe a écrit : > On Sat, 9 Mar 2019 17:44:02 +0100 olivier sallou > wrote: > > Looking at core generated file and using gdb we see that it fails in > > fortran lib. > > > > Either program tries something wrong in a fortran u

Bug#925745: Bug#925745: [Help] libgtextutils: ftbfs with GCC-9

2019-09-25 Thread Olivier Sallou
ave non  :-( was expecting something from debian mentors which was in cc... > > Kind regards > > Andreas. > -- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438

Bug#871933: xsynth-dssi: no Gui for plugin after loading

2019-09-13 Thread Olivier Humbert
layed. I hope the more-than-me knowledgeable people will find what's wrong here since I'm very puzzled myself and don't know who/where to investigate. HTH, Olivier

Bug#920545: python-intervaltree breaks python-intervaltree-bio autopkgtest

2019-08-21 Thread olivier sallou
n/data autopkgtest [13:30:25]: test command1: [--- ... 4 passed, 2 warnings in 44.85 seconds = Olivier > > Kind regards > > Andreas. > > [1] https://salsa.debian.org/med-team/python-intervaltree-bio > > -- > http://fam-tille.de >

Bug#935287: uglu patch proposal

2019-08-21 Thread Olivier Sallou
not supported and clean step is ran before patches So feel free to use this patch, but I do not really like it  :-( From 4b07d43ce328690fac4965aafc4d3252c72b95ec Mon Sep 17 00:00:00 2001 From: Olivier Sallou Date: Wed, 21 Aug 2019 12:03:31 + Subject: [PATCH] remove sphinx related doc

Bug#935287: [Debian-med-packaging] Bug#935287: obitools: FTBFS on amd64

2019-08-21 Thread Olivier Sallou
step with a no cleanup Olivier On 8/21/19 1:07 PM, Ivo De Decker wrote: > package: src:obitools > version: 1.2.13+dfsg-1 > severity: serious > tags: ftbfs > > Hi, > > A binnmu of obitools in unstable fails on amd64: > > https://buildd.debian.org/status/pac

Bug#925745: [Debian-med-packaging] Bug#925745: [Help] libgtextutils: ftbfs with GCC-9

2019-08-20 Thread Olivier Sallou
On 8/20/19 3:41 PM, Andreas Tille wrote: > Hi Olivier, > > I'm just forwarding this to Debian Mentors list to get a wider audience. > I'd prefer a fix over simply removing the test ... commenting in text_line_reader.h:         // operator const std::string& ()

Bug#925745: [Debian-med-packaging] Bug#925745: [Help] libgtextutils: ftbfs with GCC-9

2019-08-20 Thread Olivier Sallou
it conversion to std::istream However, as it is a library, implicit conversion may fail on other tools linking with this lib Best of course would be to get a fix for this assignement operator Olivier > > > ... > g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -

Bug#931808: comix: broken after python-pil:amd64 5.4.1-2 -> 6.1.0-1 upgrade

2019-07-10 Thread Olivier
ssert Image.__version__ >= '1.1.5' Thanks by advance to fix this bug ! Best regards, Olivier -- System Information: Debian Release: 10.0 APT prefers testing APT policy: (900, 'testing'), (800, 'stable'), (90, 'unstable'), (40, 'e

Bug#931044: CVE-2019-9740-CVE-2019-9947.diff

2019-06-25 Thread Olivier Bonvalet
Hi, in the patch CVE-2019-9740-CVE-2019-9947.diff, the code use "formatted string literals", which is a Python 3.6 feature.

Bug#925568: [Debian-med-packaging] Bug#925568: cnvkit: FTBFS: FileExistsError: [Errno 17] File exists: 'build/'

2019-03-27 Thread Olivier Sallou
d in UNRELEASED state. As we are in freeze, should we ask release team to unblock transition and then push to unstable? Though not a bug issue, bug could be forwarded upstream as it raises an error to use an existing dir. Olivier > > Relevant part (hopefully): >> make[2]: Entering dir

Bug#923756: [Debian-med-packaging] Bug#923756: libhac-java: FTBFS in buster/sid

2019-03-04 Thread Olivier Sallou
idea how to fix this? Short term workaround would be to disable javadoc generation and related package Found many related bugs but no quick resolution and patching code may be a long task Olivier > > Kind regards > > Andreas. > > -- > http://fam-tille.de > &

Bug#923731: [Debian-med-packaging] Bug#923731: igv depends on packages which were removed in picard-tools

2019-03-04 Thread Olivier Sallou
not be reflected on packages. As long as package itself has no specific requirement, I would prefer to keep it built for all archs, even if it fails due to dependency. Olivier now the igv binaries > probably should be removed on all other architectures, however I cannot find a > ftp removal b

Bug#916953: logol FTBFS with swi-prolog 7.7.25+dfsg-2

2018-12-20 Thread olivier sallou
#916942: swi-prolog: fails to load process library Will investigate if i can understand why it fails in the meanwhile as a workaround Le jeu. 20 déc. 2018 à 21:33, Andreas Tille a écrit : > Hi Olivier, > > since upstream has just released a new upstream version some hours ago > my h

Bug#893409: pixelmed FTBFS with openjdk-9

2018-12-19 Thread Olivier Sallou
On 12/19/18 11:46 AM, Andreas Tille wrote: > Hi, > > On Wed, Dec 19, 2018 at 10:39:55AM +0100, Olivier Sallou wrote: >>> The missing class is in libjaxb-api-java. Just make sure it's on the >>> CLASSPATH. >> yeap, an other issue at java migration to openj

Bug#893409: pixelmed FTBFS with openjdk-9

2018-12-19 Thread Olivier Sallou
On 12/19/18 11:46 AM, Andreas Tille wrote: > Hi, > > On Wed, Dec 19, 2018 at 10:39:55AM +0100, Olivier Sallou wrote: >>> The missing class is in libjaxb-api-java. Just make sure it's on the >>> CLASSPATH. >> yeap, an other issue at java migration to openj

Bug#893409: pixelmed FTBFS with openjdk-9

2018-12-19 Thread Olivier Sallou
jdk 10/11 Adding this lib to deps should fix the pb > Regards, > > Markus > > > > ___ > Debian-med-packaging mailing list > debian-med-packag...@alioth-lists.debian.net > https://alioth-lists.debian.net/cgi-bin/mailman/li

Bug#906371: [Debian-med-packaging] Bug#906371: Changes in alter-sequence-alignment break build of jmodeltest (Was: Bug#906371: jmodeltest: FTBFS in buster/sid)

2018-12-17 Thread Olivier Sallou
1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/Distributor.java:23: >> warning: [deprecation] Observable in java.util has been deprecated >> [javac] import java.util.Observable; >> [javac] ^ > Any more hints? > > Kind regards > >Andreas. > -- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438

Bug#916000: [Debian-med-packaging] Bug#916000: ncbi-blast+: FTBFS - Makefile.flat: No such file or directory

2018-12-10 Thread Olivier Sallou
m.nih.gov/viewvc/v1?view=revision&revision=79929 > > Olivier, will you have time to integrate these changes, or should I? no time for the moment, if you can do it,  I would appreciate thanks Olivier > -- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RE

Bug#913839: not internet access

2018-11-16 Thread olivier sallou
issue is not related to an internet access. it tries to get local host name or address : java.net.InetAddress.getLocalHost(..) and result in java.net.UnknownHostException: profitbricks-build15-amd64: profitbricks-build15-amd64: Temporary failure in name resolution According to Java: This is achiev

Bug#895765: [Debian-med-packaging] Bug#895765: IGV FTBFS with Java 11

2018-11-10 Thread Olivier Sallou
additional remark: igv will in this case need to depend on java >= 11 as this modification for build and runtime will work only for jdk11 and above this jdk module/deprecation transition is quite a pain and make it difficult to get packages work for different jdk versions - Mail origin

Bug#912235: activation and corba removed from jdk

2018-11-06 Thread Olivier Sallou
g to rename calls) for Corba related stuff, don't know for any replacement. Olivier -- gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438

Bug#912385: rdp-classifier FTBFS with OpenJDK 11

2018-10-31 Thread Olivier Sallou
- Mail original - > De: "andreas" > À: 912...@bugs.debian.org, "Debian Java List" > Envoyé: Mercredi 31 Octobre 2018 07:07:36 > Objet: Re: Bug#912385: rdp-classifier FTBFS with OpenJDK 11 > Control: tags -1 help > > Hi, > > I'm afraid I need help for this bug from the Debian Java te

Bug#912386: [Debian-med-packaging] Bug#912386: rdp-readseq FTBFS with OpenJDK 11

2018-10-31 Thread Olivier Sallou
(javac, java , ...) needs to add javax.xml module with --add-module option (not sure of syntax). We have other packages where we added such option with java upgrades. I am on travel, cannot fix this now but I can have a look later on. But adding option should do the job (if there is a shell t

Bug#895765: IGV

2018-10-18 Thread Olivier Sallou
On 10/18/2018 08:25 PM, Andreas Tille wrote: > Hi Olivier, > > On Thu, Oct 18, 2018 at 06:18:58PM +0200, Olivier Sallou wrote: >> testing with your removals, you only need to add to build gradle file >> the ref to htsjdk > I've now pushed the freshly stripped ups

Bug#895765: IGV

2018-10-18 Thread Olivier Sallou
On 10/18/2018 04:06 PM, Andreas Tille wrote: > Hi Olivier, > > On Thu, Oct 18, 2018 at 01:05:12PM +0200, Olivier Sallou wrote: >>> I tried a patch to use Debian htsjdk, and pushed it. IGV ui starts, but >>> fails with other X11 errors >>> >>> 2018-10

Bug#895765: IGV

2018-10-18 Thread Olivier Sallou
On 10/18/2018 04:06 PM, Andreas Tille wrote: > Hi Olivier, > > On Thu, Oct 18, 2018 at 01:05:12PM +0200, Olivier Sallou wrote: >>> I tried a patch to use Debian htsjdk, and pushed it. IGV ui starts, but >>> fails with other X11 errors >>> >>> 2018-10

Bug#895765: IGV

2018-10-18 Thread Olivier Sallou
On 10/18/2018 12:15 PM, Olivier Sallou wrote: > > On 10/18/2018 12:03 PM, Olivier Sallou wrote: >> On 10/18/2018 11:42 AM, Andreas Tille wrote: >>> Hi Olivier, >>> >>> On Thu, Oct 18, 2018 at 11:13:31AM +0200, Olivier Sallou wrote: >>>>> Un

Bug#895765: IGV

2018-10-18 Thread Olivier Sallou
On 10/18/2018 12:03 PM, Olivier Sallou wrote: > > On 10/18/2018 11:42 AM, Andreas Tille wrote: >> Hi Olivier, >> >> On Thu, Oct 18, 2018 at 11:13:31AM +0200, Olivier Sallou wrote: >>>> Unfortunately if I start the package I get t

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