Bug#1077055: [Debichem-devel] Bug#1077055: Bug#1077055: Bug#1077055: Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-09-24 Thread Michael Banck
Hi, On Tue, Sep 24, 2024 at 05:42:50PM +0200, Michael Banck wrote: > On Tue, Sep 24, 2024 at 05:22:58PM +0300, Andrius Merkys wrote: > > On 2024-09-24 17:09, David Lounsbrough wrote: > > > I ran this inside my Docker container, it says the latest version of the > > > package is installed: > > > >

Bug#1077055: [Debichem-devel] Bug#1077055: Bug#1077055: Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-09-24 Thread Michael Banck
Hi, On Tue, Sep 24, 2024 at 05:22:58PM +0300, Andrius Merkys wrote: > On 2024-09-24 17:09, David Lounsbrough wrote: > > I ran this inside my Docker container, it says the latest version of the > > package is installed: > > > > # apt-get -s install postgresql-16-rdkit > > Reading package lists...

Bug#1077055: [Debichem-devel] Bug#1077055: Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-09-24 Thread Andrius Merkys
Hi David, On 2024-09-24 17:09, David Lounsbrough wrote: I ran this inside my Docker container, it says the latest version of the package is installed: # apt-get -s install postgresql-16-rdkit Reading package lists... Done Building dependency tree... Done Reading state information... Done postg

Bug#1077055: [Debichem-devel] Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-09-24 Thread David Lounsbrough
I ran this inside my Docker container, it says the latest version of the package is installed: # apt-get -s install postgresql-16-rdkit Reading package lists... Done Building dependency tree... Done Reading state information... Done postgresql-16-rdkit is already the newest version (202303.3-3.pgd

Bug#1077055: [Debichem-devel] Bug#1077055: Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-09-24 Thread Andrius Merkys
Hi, On 2024-09-24 16:30, David Lounsbrough wrote: Hi, I am simply standing up a Postgres database with this package installed in it. This is the entire Dockerfile I am using: ``` FROM postgres:16 AS postgres-env RUN apt-get update && \   apt-get install -yq postgresql-16-rdkit && \   apt-ge

Bug#1077055: [Debichem-devel] Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-09-24 Thread David Lounsbrough
Hi, I am simply standing up a Postgres database with this package installed in it. This is the entire Dockerfile I am using: ``` FROM postgres:16 AS postgres-env RUN apt-get update && \ apt-get install -yq postgresql-16-rdkit && \ apt-get clean ``` I get the same results when building it fre

Bug#1077055: [Debichem-devel] Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-09-23 Thread Andrius Merkys
Control: tags -1 + moreinfo Hi David, On Thu, 25 Jul 2024 12:05:55 -0500 David Lounsbrough wrote: To reproduce, I simply ran this Dockerfile: FROM postgres:16 AS postgres-env RUN apt-get update && \ apt-get install -yq postgresql-16-rdkit && \ apt-get clean Then when I try to build a

Bug#1077055: [Debichem-devel] Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-07-29 Thread Andrius Merkys
Hi David, On 7/25/24 18:51, David Lounsbrough via Debichem-devel wrote: I wanted to ask if there's a reason that `inchi` support is not enabled for this package. You can read more about the attempts to enable InChI support in rdkit in [1]. In short, inchi package in Debian seems incompatible

Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-07-25 Thread David Lounsbrough
Package: postgresql-16-rdkit Severity: normal Dear Maintainer, I wanted to ask if there's a reason that `inchi` support is not enabled for this package. I believe it is as simple as adding `RDK_BUILD_INCHI_SUPPORT=ON` to the cmake command: https://salsa.debian.org/debichem-team/rdkit/-/blob/m