Bug#1077055: [Debichem-devel] Bug#1077055: Bug#1077055: Bug#1077055: Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-09-24 Thread Michael Banck
Hi, On Tue, Sep 24, 2024 at 05:42:50PM +0200, Michael Banck wrote: > On Tue, Sep 24, 2024 at 05:22:58PM +0300, Andrius Merkys wrote: > > On 2024-09-24 17:09, David Lounsbrough wrote: > > > I ran this inside my Docker container, it says the latest version of the > > > package is installed: > > > >

Bug#1077055: [Debichem-devel] Bug#1077055: Bug#1077055: Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-09-24 Thread Michael Banck
Hi, On Tue, Sep 24, 2024 at 05:22:58PM +0300, Andrius Merkys wrote: > On 2024-09-24 17:09, David Lounsbrough wrote: > > I ran this inside my Docker container, it says the latest version of the > > package is installed: > > > > # apt-get -s install postgresql-16-rdkit > > Reading package lists...

Bug#1077055: [Debichem-devel] Bug#1077055: Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-09-24 Thread Andrius Merkys
Hi David, On 2024-09-24 17:09, David Lounsbrough wrote: I ran this inside my Docker container, it says the latest version of the package is installed: # apt-get -s install postgresql-16-rdkit Reading package lists... Done Building dependency tree... Done Reading state information... Done postg

Bug#1077055: [Debichem-devel] Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-09-24 Thread David Lounsbrough
I ran this inside my Docker container, it says the latest version of the package is installed: # apt-get -s install postgresql-16-rdkit Reading package lists... Done Building dependency tree... Done Reading state information... Done postgresql-16-rdkit is already the newest version (202303.3-3.pgd

Bug#1077055: [Debichem-devel] Bug#1077055: Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-09-24 Thread Andrius Merkys
Hi, On 2024-09-24 16:30, David Lounsbrough wrote: Hi, I am simply standing up a Postgres database with this package installed in it. This is the entire Dockerfile I am using: ``` FROM postgres:16 AS postgres-env RUN apt-get update && \   apt-get install -yq postgresql-16-rdkit && \   apt-ge

Bug#1077055: [Debichem-devel] Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-09-24 Thread David Lounsbrough
Hi, I am simply standing up a Postgres database with this package installed in it. This is the entire Dockerfile I am using: ``` FROM postgres:16 AS postgres-env RUN apt-get update && \ apt-get install -yq postgresql-16-rdkit && \ apt-get clean ``` I get the same results when building it fre

Bug#1077055: [Debichem-devel] Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-09-23 Thread Andrius Merkys
Control: tags -1 + moreinfo Hi David, On Thu, 25 Jul 2024 12:05:55 -0500 David Lounsbrough wrote: To reproduce, I simply ran this Dockerfile: FROM postgres:16 AS postgres-env RUN apt-get update && \ apt-get install -yq postgresql-16-rdkit && \ apt-get clean Then when I try to build a

Bug#1077055:

2024-08-05 Thread David Lounsbrough
I see, thanks for the information. From the linked bug it sounds like it may be available in the future. I'll defer to you on whether to keep this bug open or to close it. Thanks!

Bug#1077055: [Debichem-devel] Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-07-29 Thread Andrius Merkys
Hi David, On 7/25/24 18:51, David Lounsbrough via Debichem-devel wrote: I wanted to ask if there's a reason that `inchi` support is not enabled for this package. You can read more about the attempts to enable InChI support in rdkit in [1]. In short, inchi package in Debian seems incompatible

Bug#1077055:

2024-07-25 Thread David Lounsbrough
I realized RDK_BUILD_INCHI_SUPPORT is already set in the build script: https://salsa.debian.org/debichem-team/rdkit/-/blob/master/Scripts/create_deb_packages.sh?ref_type=heads#L9. Perhaps there is something else then that is causing the issue. To reproduce, I simply ran this Dockerfile: FROM po

Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-07-25 Thread David Lounsbrough
Package: postgresql-16-rdkit Severity: normal Dear Maintainer, I wanted to ask if there's a reason that `inchi` support is not enabled for this package. I believe it is as simple as adding `RDK_BUILD_INCHI_SUPPORT=ON` to the cmake command: https://salsa.debian.org/debichem-team/rdkit/-/blob/m