Hi Andreas,
Andreas Tille, on 2022-11-24:
> Am Thu, Nov 24, 2022 at 10:28:43AM +0900 schrieb Charles Plessy:
> > I have read the Muscle5 paper and it is a totally different program than
> > Muscle3.
> >
> > https://pubmed.ncbi.nlm.nih.gov/36379955/
> >
> > Reintroducing muscle3 as a separate
Hi Charles,
thank you for the hint.
Am Thu, Nov 24, 2022 at 10:28:43AM +0900 schrieb Charles Plessy:
> I have read the Muscle5 paper and it is a totally different program than
> Muscle3.
>
> https://pubmed.ncbi.nlm.nih.gov/36379955/
>
> Reintroducing muscle3 as a separate package might be u
Hello everybody,
I have read the Muscle5 paper and it is a totally different program than
Muscle3.
https://pubmed.ncbi.nlm.nih.gov/36379955/
Reintroducing muscle3 as a separate package might be useful not only to
Biopython, but also to the people who need it in pipelines, etc.
Have a nice d
Hi all,
Andrius Merkys, on 2022-10-17:
> On 2022-10-13 14:31, Andreas Tille wrote:
> > > On Thu, 7 Apr 2022 15:44:43 +0300 Andrius Merkys
> > > wrote:
> > > > python3-biopython is incompatible with muscle >= 5.
> > > I tend to think this is serious-ish as biopython integration with muscle
> > >
Hi Andreas,
On 2022-10-13 14:31, Andreas Tille wrote:
On Thu, 7 Apr 2022 15:44:43 +0300 Andrius Merkys wrote:
python3-biopython is incompatible with muscle >= 5.
I tend to think this is serious-ish as biopython integration with muscle
from Debian package will not work. Upstream has been notif
Hello,
Since the bookworm's freeze is getting closer, I would like to attract
team's attention to bug #1009118 in biopython:
On Thu, 7 Apr 2022 15:44:43 +0300 Andrius Merkys wrote:
python3-biopython is incompatible with muscle >= 5.
I tend to think this is serious-ish as biopython integratio
Control: tags -1 + wontfix
Hello,
The upstream has confirmed that command line wrappers are deprecated and
will most likely be removed before bookworm freeze. Thus there is no
need to patch this. I suggest keeping this issue open until bookworm
release as a reminder to check this before the relea
Hi Étienne,
On Sat, 9 Apr 2022 11:32:03 +0200 =?utf-8?Q?=C3=89tienne?= Mollier
wrote:
> Control: tags -1 + confirmed
> Control: forwarded -1 https://github.com/biopython/biopython/issues/3902
Thanks for forwarding the issue upstream.
> There seems to be enough changes between the two versions t
Package: python3-biopython
Severity: important
Tags: upstream
Hello,
python3-biopython is incompatible with muscle >= 5. Upstream tests
detect this incompatibility:
==
ERROR: test_Muscle_profile_simple (test_Muscle_tool.MuscleAp
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