Bug#1107769: unblock: jupyterlab/4.0.11+ds1+~cs11.25.27-7

2025-06-13 Thread Picca Frédéric-Emmanuel
+ [ Jérémy Lal ] + * Fix build of bundled browser module (Closes: #1102558). +Adds a webpack plugin to support modules prefixed by "node:". + + [ Picca Frédéric-Emmanuel ] + * switch to the upstream (hatchling) build system. +- now jupyterlab is well integrated with jupyterhub

Bug#1107456: closed by Ivo De Decker (Re: Bug#1107456: Acknowledgement (pre-unblock: uncertainties/3.2.3+really3.2.2-1))

2025-06-09 Thread picca
Santiago Vila writes: > I would guess that at some point some of those tests started to fail, > we probably asked upstream, and they probably told us "I don't care > about 32-bit". Yes exactly. I requested support for the upstrezm in order to fix the test suit on 32bit arch and they told me thah

Bug#1096136: [Debian-pan-maintainers] Bug#1096136: Bug#1096136: Bug#1096136: jupyterlab: Fail to get yarn configuration. Expecting value: line 1 column 1 (char 0)

2025-06-02 Thread PICCA Frederic-Emmanuel
What about adding an autopkgtest which just rebuild the package in order to catch this kind of failure ? Fred

Bug#1096136: [Debian-pan-maintainers] Bug#1096136: jupyterlab: Fail to get yarn configuration. Expecting value: line 1 column 1 (char 0)

2025-06-02 Thread PICCA Frederic-Emmanuel
\> Hi, > > can you explain how you start it (to make sure I can check if it is fixed). Yes :) jupyter-lab it will open a browser and we should see the desktop of jupyter lab and not a blank screen. My question is why do we need this kind of patch in order to build it on Debian ? Is there

Bug#1102558: Info received (jupyterlab: runtime fails with ReferenceError: require is not defined)

2025-05-30 Thread PICCA Frederic-Emmanuel
The previous version of node-rjsf contains import { webcrypto } from 'crypto';

Bug#1102558: jupyterlab: runtime fails with ReferenceError: require is not defined

2025-05-30 Thread PICCA Frederic-Emmanuel
If I remove the external commonjs crypto, the error comes from here ERROR in node:crypto Module build failed: UnhandledSchemeError: Reading from "node:crypto" is not handled by plugins (Unhandled scheme). Webpack supports "data:" and "file:" URIs by default. You may need an additional plugin to

Bug#1106713: sbuild: How bind a charactere device in unshare

2025-05-29 Thread picca
Jochen Sprickerhof writes: > Control: -1 reassign autopkgtest > > Hi Frederic, Hello Joshen >>so the idea is to implement OpenCL test on real hardware. >> >>In order to run these test the hardware should be available in the unshare >>backend. > > Why in the unshare backend? because it is the

Bug#1106727: unblock: jupyterhub/5.2.1+ds1-4

2025-05-28 Thread Picca Frédéric-Emmanuel
11:40:25.0 +0200 @@ -1,3 +1,23 @@ +jupyterhub (5.2.1+ds1-4) unstable; urgency=medium + + * use ucf in order to manage the config file + * Bug fix: "config.yaml config file that comes in package is never +read", thanks to Guillaume Knispel (Closes: #1038110). + + -- Picca Frédéric

Bug#1106713: sbuild: How bind a charactere device in unshare

2025-05-28 Thread Picca Frédéric-Emmanuel
Package: sbuild Version: 0.89.2 Severity: normal Dear Maintainer, Hello, we are trying to run autopkgtest with a computer with and AMD GPU card. so the idea is to implement OpenCL test on real hardware. In order to run these test the hardware should be available in the unshare backend. for th

Bug#1102558: [SPAM MEDIUM][Debian-pan-maintainers] Bug#1102558: jupyterlab: runtime fails with ReferenceError: require is not defined

2025-05-23 Thread PICCA Frederic-Emmanuel
While trying to rebuild the package I get this error message. ../../../../usr/share/nodejs/webpack/types.d.ts(15462,15): error TS2417: Class static side 'typeof WebpackError' incorrectly extends base class static side '{ readonly prototype: Error; captureStackTrace(targetObject: object, constru

Bug#1106291: Acknowledgement (elpa-haskell-mode: (void-variable flymake-allowed-file-name-masks))

2025-05-23 Thread picca
picca writes: It seems that during the upgrade from bookworm to trixie, the old bookworm files where not removed... https://packages.debian.org/bookworm/all/elpa-haskell-mode/filelist Cheers

Bug#1106291: Acknowledgement (elpa-haskell-mode: (void-variable flymake-allowed-file-name-masks))

2025-05-22 Thread picca
"Debian Bug Tracking System" writes: It seems that I found the culprite. on the working machine $ ls company-1.0.2 compat-30.1.0.0 debian-el-37.19 dpkg-dev-el-37.19 haskell-mode-17.5 htmlize-1.58 llama-0.6.2 magit-4.3.5 magit-section-4.3.5 notmuch-0.39 transient-0.8.8 with-editor-3.4.3

Bug#1106291: elpa-haskell-mode: (void-variable flymake-allowed-file-name-masks)

2025-05-22 Thread picca
Xiyue Deng writes: > Hi Frederic-Emmanuel, Hello Xiyue Dend, > This seems to be the same as this upstream issue[1] which was supposed > to be fixed in 17.5, and I cannot reproduce this when editing a .hs file > (with haskell-mode enabled). On my sid machine it is ok too. This bug is on a comp

Bug#1106291: elpa-haskell-mode: (void-variable flymake-allowed-file-name-masks)

2025-05-22 Thread Frederic-Emmanuel Picca
Package: elpa-haskell-mode Version: 17.5-2 Severity: normal X-Debbugs-Cc: pi...@debian.org Dear Maintainer, While trying to open an haskell file, I get a error in the consol Symbol’s value as variable is void: flymake-allowed-file-name-masks When starting emacs -q and enabling the debug on erro

Bug#1106224: sbuild does not provision a working chroot when there is an http_proxy

2025-05-22 Thread picca
for the record here my solution $unshare_mmdebstrap_extra_args = [ "*" => [ '--aptopt=Acquire::http { Proxy "http://...";; }', '--aptopt=Acquire::https { Proxy "http://...";; }', '--customize-hook=echo "export http_proxy=http://..."; > "$1"/etc/environment',

Bug#1106224: sbuild does not provision a working chroot when there is an http_proxy

2025-05-22 Thread picca
push @{$unshare_mmdebstrap_extra_args}, ("*", ['--aptopt=Acquire::http { Proxy "http://127.0.0.1:3142";; }']); do you know how to define the http_proxy and https_proxy via this same extra_args parameter. This is something not explined in the sbuild wiki.debian.org. Cheers Fred

Bug#1106224: sbuild does not provision a working chroot when there is an http_proxy

2025-05-21 Thread picca
Le 2025-05-21 16:28, Jochen Sprickerhof a écrit : Hi Fred, Hello so it seems that at first mmdebstrap use the apt proxy in order to setup the initial chroot It seems to me that mmdebstrap generate the chroot by using the system apt which is well configure. then when it enter into the chr

Bug#1106224: sbuild does not provision a working chroot when there is an http_proxy

2025-05-21 Thread Picca Frédéric-Emmanuel
the package I: No tarballs found in /home/experiences/instrumentation/picca/.cache/sbuild I: Creating new chroot tarball: mmdebstrap --variant=buildd --arch=amd64 --skip=output/mknod --format=tar unstable /home/experiences/instrumentation/picca/.cache/sbuild/unstable-amd64.tar I: automatically

Bug#1105921: Info received ([picca] Re: python3-nbclassic: Refusing to serve hidden directory, via 404 Error)

2025-05-21 Thread picca
"Debian Bug Tracking System" writes: Using the handler of the latest nbclassic it works. let's start from this full changelog and adapt it to our version of nbclassic @@ -6,8 +6,8 @@ This is a fork from jupyter/notebook#5.7.x # Copyright (c) Jupyter Development Team. # Distributed under the t

Bug#1105921: [picca] Re: python3-nbclassic: Refusing to serve hidden directory, via 404 Error

2025-05-21 Thread picca
To reproduce this issue, just run jupyter nblassic picca@page:~$ jupyter nbclassic [W 2025-05-21 08:35:39.406 ServerApp] A `_jupyter_server_extension_points` function was not found in nbclassic. Instead, a `_jupyter_server_extension_paths` function was found and will be used for now. This

Bug#1105921: python3-nbclassic: Refusing to serve hidden directory, via 404 Error

2025-05-17 Thread Picca Frédéric-Emmanuel
:32:43.583 JupyterHub provider:58] authenticate_client [D 2025-05-17 08:32:43.621 oauthlib.oauth2.rfc6749.grant_types.authorization_code authorization_code:533] Using provided redirect_uri /user/picca/oauth_callback [D 2025-05-17 08:32:43.621 JupyterHub provider:117] confirm_redirect_uri

Bug#1105751: sbuild: No entry for picca in /etc/subuid

2025-05-14 Thread Picca Frédéric-Emmanuel
s found in /home/experiences/instrumentation/picca/.cache/sbuild No entry for picca in /etc/subuid invalid idmap E: Error creating chroot session: skipping ufo-filters +--+ | Summary Wed, 1

Bug#1104861: node-moment: missin dependency to libjs-moment

2025-05-07 Thread Picca Frédéric-Emmanuel
Package: node-moment Version: 2.29.4+ds-1 Severity: normal Dear Maintainer, Hello while préparing jupyterhub, I foudn this error picca@page:~/debian/python-team/packages/jupyterhub/node_modules/moment$ ls -l total 44 -rw-r--r-- 1 root root39 13 juil. 2022 ender.js lrwxrwxrwx 1 root root

Bug#1104588: Could not open static file '/usr/share/jupyterhub/static/components/bootstrap/dist/js/bootstrap>

2025-05-02 Thread Picca Frédéric-Emmanuel
Source: jupyterhub Severity: normal X-Debbugs-Cc: pi...@debian.org Hello, while trying to use jupyterhub, I get these error messages mai 02 15:17:49 jupyterhub[52751]: [E 2025-05-02 15:17:49.332 JupyterHub web:3118] Could not open static file '/usr/share/jupyterhub/static/components/bootstrap/d

Bug#1104442: jupyterhub: Please activate the unit test and provide autopkgtest

2025-04-30 Thread Picca Frédéric-Emmanuel
Source: jupyterhub Version: 5.2.1+ds1-2 Severity: normal Dear Maintainer, In order to improve the quality of the package it would be great if the unit test could be run during the build and via autopkgtest. For now it fail with this error I: pybuild base:311: cd /build/reproducible-path/jupyt

Bug#1104404: jupyterhub: missing python3-alembic dependency

2025-04-29 Thread Picca Frédéric-Emmanuel
Package: jupyterhub Version: 5.2.1+ds1-2 Severity: normal Dear Maintainer, When starting jupyterhub I get this error message > avril 29 10:50:14 systemd[1]: Started jupyterhub.service. > avril 29 10:50:16 python3[4588]: [I 2025-04-29 10:50:16.028 JupyterHub > app:3346] Running JupyterHub versio

Bug#1104352: customize apache LimitMEMLOCK in the package

2025-04-29 Thread Picca Frédéric-Emmanuel
Source: qemu-web-desktop Severity: normal X-Debbugs-Cc: pi...@debian.org In order to start VM from apache we need to be able to allocate a big amount of memory. We need to customize the apache service by droping a file which contrain [Service] LimitMEMLOCK=infinity in the package here /lib/s

Bug#1102130: node-ipydatagrid: Please provide the python module

2025-04-05 Thread Picca Frédéric-Emmanuel
Source: node-ipydatagrid Version: 1.4.0+~cs14.21.116-1 Severity: normal Dear Maintainer, A python module ipydatagrid is available in the sources. Could you provide it ? -- System Information: Debian Release: trixie/sid APT prefers unstable APT policy: (500, 'unstable'), (500, 'testing') Ar

Bug#1102115: ipywidgets: Provide the node packages for ipywidgets

2025-04-05 Thread Picca Frédéric-Emmanuel
Source: ipywidgets Version: 8.1.5-6 Severity: normal Dear Maintainer, It would be great if the ipywidget package could become the source package of the node-jupyter-widgets-xxx provider instead of the ipydatagrid. at least node-jupyter-widgets-base node-jupyter-widgets-base-manager node-jupyte

Bug#1100766: vtk9: could you activate a bunch of modules for paraview

2025-04-04 Thread Frederic-Emmanuel Picca
Package: vtk9 Version: 9.3.0+dfsg1-4 Severity: wishlist X-Debbugs-Cc: pi...@debian.org Dear Maintainer, I was trying to build paraview with the system vtk instead of the one embeded into paraview. but I end up with these errors. CMake Error at CMakeLists.txt:562 (message): Please reconfigure

Bug#1095742: cambalache: broken dependencies

2025-03-25 Thread Picca Frédéric-Emmanuel
Package: cambalache Version: 0.94.1-2 Followup-For: Bug #1095742 Dear Maintainer, $ cambalache pseudo-4.ui Traceback (most recent call last): File "/usr/bin/cambalache", line 42, in from cambalache.app import CmbApplication File "/usr/lib/python3/dist-packages/cambalache/__init__.py",

Bug#1100293: python-xarray: FTBFS: E RuntimeWarning: invalid value encountered in sqrt

2025-03-22 Thread picca
With the upload of the new zarr, the errors are now === short test summary info FAILED xarray/tests/test_groupby.py::test_dask_da_groupby_quantile - Failed: ... FAILED xarray/tests/test_weighted.py::test_weighted_operations_keep_attr[False-Tr

Bug#1101026: zarr: Could you package the latest 3.0.6 version

2025-03-22 Thread Picca Frédéric-Emmanuel
Source: zarr Severity: normal Dear Maintainer, I am wondering if the bug fix in zarr will not help with the xarray FTBFS[1]. In the changelog we see What's Changed fix: restore attrs del functionality by @ianhi in #2908 release: update release notes for 3.0.6 by @jhamman in #2923 and

Bug#1100762: paraview: FTBFS in unstable

2025-03-18 Thread Frederic-Emmanuel Picca
Package: paraview Version: 5.13.2+dfsg-3 Severity: important Tags: ftbfs X-Debbugs-Cc: pi...@debian.org Dear Maintainer, while trying to rebuild paraview in a clean unstable chroot, I got at least these erros: cd /build/reproducible-path/paraview-5.13.2+dfsg/build.python3.13/Wrapping/Python

Bug#1099671: libboost-numpy1.83.0: the numpy2 support is not complete

2025-03-15 Thread Frederic-Emmanuel Picca
Package: libboost-numpy1.83.0 Version: 1.83.0-4.1+b1 Severity: important X-Debbugs-Cc: pi...@debian.org Dear Maintainer, I am trying to fix the autopkgtest of cctbx but I end up with a segfault here 0 PyArray_GetCastingImpl (from=0x9fb020 , to=to@entry=0xe4dae0) at ../numpy/_core/src/multiarra

Bug#1100176: debci: How to deal with a ban when testing a remote API ?

2025-03-12 Thread Picca Frédéric-Emmanuel
Package: debci Severity: normal X-Debbugs-Cc: pi...@debian.org Hello I am trying to fix the autopkgtest of python-mp-api[1] . It seems that the test are failling to a ban of our IP adresses. 183s ERRORS 183s ___

Bug#1100173: ModuleNotFoundError: No module named 'silver_platter.debian'; 'silver_platter' is not a package

2025-03-12 Thread Picca Frédéric-Emmanuel
Package: silver-platter Version: 0.5.44-1+b1 Severity: important X-Debbugs-Cc: pi...@debian.org Hello, picca@cush:/tmp$ debian-svp new-upstream libobjcryst Traceback (most recent call last): File "/usr/bin/debian-svp", line 33, in sys.exit(load_entry_point('silver-

Bug#1099741: dgit: does not work out of the box with the rosettasciio repository

2025-03-07 Thread Picca Frédéric-Emmanuel
':!/.gitignore' ':!*/.gitignore' dgit: dgit: ... debian/patches is missing; perhaps this is a patch queue branch? picca@page:~/debian/science-team/hyperspy$ git diff 4f3547c9556f7313400bf895d6a00bce3b8e6ee5 HEAD -- :/ ':!debian' ':!/.gitignore' ':!

Bug#1099126: sbuild: The repository 'http://deb.debian.org/debian UNRELEASED Release' does not have a Release file.

2025-03-01 Thread Picca Frédéric-Emmanuel
[17:20:31]: host page; command line: /usr/bin/autopkgtest /home/picca/debian/science-team/pyfai_2025.01-1.dsc /home/picca/debian/science-team/pyfai_2025.01-1_amd64.changes -- unshare --release UNRELEASED --arch amd64 : failure: ['mmdebstrap', '--variant=apt', '--skip

Bug#1099038: Acknowledgement (silx: Permission denied: '/usr/lib/python3/dist-packages/silx/pytest-cache-files-0lxt05lh')

2025-02-28 Thread picca
It seems that the pytest cache directory try to write under a read only part of the system... Testing with python3.13: = test session starts == platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13 cachedir:

Bug#1099038: silx: Permission denied: '/usr/lib/python3/dist-packages/silx/pytest-cache-files-0lxt05lh'

2025-02-27 Thread Picca Frédéric-Emmanuel
Package: silx Version: 1.1.0+dfsg-5 Severity: important Dear Maintainer, The autopkgtests fail with this error message 477s File "/usr/lib/python3/dist-packages/_pytest/cacheprovider.py", line 184, in set 477s self._mkdir(path.parent) 477s File "/usr/lib/python3/dist-packages/_pytest/ca

Bug#1092406: [Debian-pan-maintainers] Bug#1092406: ifeffit: diff for NMU version 2:1.2.11d-12.7

2025-02-16 Thread PICCA Frederic-Emmanuel
thanks a lot, it is ok with this NMU, you can also commit to the git repositoy if you want :). https://salsa.debian.org/science-team/ifeffit Cheers Fred

Bug#1075228: Fixing lisaac or is it time to remove it?

2025-02-15 Thread picca
Hello Andreas, you can fill an RM request. I think also that I do not have any time for this software which I do not use anymore myself... I switched to haskell ;). Cheers Fred

Bug#1092998: [Debian-pan-maintainers] Bug#1092998: pyvkfft-cuda: rebuild for python3.13 as default python version

2025-01-14 Thread PICCA Frederic-Emmanuel
Is it possible to make it binNMUable ? Fred - Le 14 Jan 25, à 13:20, Emilio Pozuelo Monfort po...@debian.org a écrit : > Package: pyvkfft-cuda > Version: 2024.1.4+ds1-4 > Severity: serious > > Hi, > > The ongoing python3.13 as python3 interpreter causes your package to be > uninstallable,

Bug#1087738: [Debian-pan-maintainers] Bug#1087738: Incomplete patch

2024-12-26 Thread PICCA Frederic-Emmanuel
for more details): - hkl-0.1.0.2 (lib) (first run) - hkl-0.1.0.2 (exe:binoculars-ng) (first run) Preprocessing library for hkl-0.1.0.2.. Building library for hkl-0.1.0.2.. [18 of 36] Compiling Hkl.H5 ( src/Hkl/H5.hs, /home/picca/src/repo.or.cz/hkl/binoculars-ng/dist-newstyle/build/x86_64

Bug#1087855: cli11: autopkgtest regression due to new CMake deprecation warning

2024-11-27 Thread picca
Hello Jose Luis, is it possible to solve this bug in order to avoid a bunch of reverse dependency removal. thanks a lot Frédéric-Emmanuel

Bug#1086956: scipy: how to provide the pooch data's ?

2024-11-07 Thread Picca Frédéric-Emmanuel
Source: scipy Severity: normal X-Debbugs-Cc: pi...@debian.org Hello, I am working on package which require the ascent.dat in order to run its test. /usr/lib/python3/dist-packages/scipy/datasets/_fetchers.py:71: in ascent fname = fetch_data("ascent.dat") _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

Bug#1082845: Info received (Bug#1082845: rocm-opencl-icd: CommandLine Error: Option 'sanitizer-early-opt-ep' registered more than once!)

2024-10-01 Thread picca
graph... Checking test dependency graph end test 1 Start 1: clpeak_test_run 1: Test command: /home/picca/tmp/clpeak-1.1.2/obj-x86_64-linux-gnu/clpeak 1: Working Directory: /home/picca/tmp/clpeak-1.1.2/obj-x86_64-linux-gnu 1: Test timeout computed to be: 1000 1: 1: Platform: AMD Accelerated

Bug#1082845: rocm-opencl-icd: CommandLine Error: Option 'sanitizer-early-opt-ep' registered more than once!

2024-10-01 Thread picca
Le 2024-09-30 08:57, Cordell Bloor a écrit : Hi Fred, Hello Thanks. Does this clpeak work for you? Or are you experiencing this same bug? I am the one who reported the bug, so yes I am affected by this same bug ;) We could try reviewing the package lists of systems where it works and wh

Bug#1082845: rocm-opencl-icd: CommandLine Error: Option 'sanitizer-early-opt-ep' registered more than once!

2024-09-28 Thread picca
Hello, In any case, it works on my machine. I cannot reproduce the bug, so it will require more investigation to determine why you're encountering this problem and I am not. What kind of investigation ?. I can test a few things. another point It would be great if the rocm-opencl-icd packag

Bug#1082878: python3-gemmi: Please add the dist-info data's

2024-09-27 Thread Picca Frédéric-Emmanuel
Package: python3-gemmi Severity: important X-Debbugs-Cc: pi...@debian.org Dear Maintainer, While preparing the new version of dials, I discoverd that the gemmi dependency was not automatically generated during the packaging process. Indeed, python3-gemmi does not provide the necessary dist-info

Bug#1082845: rocm-opencl-icd: CommandLine Error: Option 'sanitizer-early-opt-ep' registered more than once!

2024-09-27 Thread Frederic-Emmanuel Picca
Package: rocm-opencl-icd Version: 5.7.1-5 Severity: important X-Debbugs-Cc: pi...@debian.org Dear Maintainer, I just installed rocm-opencl-icd and try to run the clpeak program. But I get this error message $ clpeak : CommandLine Error: Option 'sanitizer-early-opt-ep' registered more than once!

Bug#1082027: ITP: webext-folder-account -- Manage folder accounts

2024-09-17 Thread PICCA Frederic-Emmanuel
- Le 17 Sep 24, à 20:02, Mechtilde Stehmann mechti...@debian.org a écrit : > Package: wnpp > Severity: wishlist > Owner: Mechtilde Stehmann > X-Debbugs-Cc: debian-de...@lists.debian.org, mechti...@debian.org > > * Package name: webext-folder-account > Version : 12.0 > Upstre

Bug#1078439: bornagain: error while loading shared libraries: _libBornAgainGUI.so: cannot open shared object file: No such file or directory

2024-08-10 Thread Picca Frédéric-Emmanuel
Package: bornagain Version: 22~git20240726093306.cb41cc4+ds3-1 Severity: important X-Debbugs-Cc: pi...@debian.org Dear Maintainer, While trying to use bornagain, I got this error message $ bornagain bornagain: error while loading shared libraries: _libBornAgainGUI.so: cannot open shared object

Bug#1078268: [Debian-pan-maintainers] Bug#1078268: pyfai: please make the package build reproducible

2024-08-09 Thread PICCA Frederic-Emmanuel
> That is true. I don't consider the bug to be the use of a temporary > directory, > but instead the embedding of build paths. I'll do some more investigation to > try to figure out whether that can be resolved within the build toolchain. thanks > It appears my fix here is incomplete or inaccu

Bug#1078268: [Debian-pan-maintainers] Bug#1078268: pyfai: please make the package build reproducible

2024-08-09 Thread PICCA Frederic-Emmanuel
> The meson-python build generates and uses a temporary, randomized build > directory path only when no build-dir setting is already configured. So we > may > be able to resolve this problem by choosing an appropriate static build-dir. why not fixing meson-python directly. This way it is simp

Bug#1078268: [Debian-pan-maintainers] Bug#1078268: pyfai: please make the package build reproducible

2024-08-09 Thread PICCA Frederic-Emmanuel
If you are part of the Debian science just push to the repository. It is easyer for me to revert from git, than to remember to check for MR :) thanks a lot for these investigation. it is very appreciable Frederic - Le 9 Aoû 24, à 13:18, James Addison via Debian-pan-maintainers debian-p

Bug#982601: python3-paraview Conflicts: python3-vtk9

2024-08-08 Thread PICCA Frederic-Emmanuel
Hello, I am the facet-analyser maintainer/upstream (support) If fact the conflict comes from facet-analyser -> libinsighttoolkit5-dev -> lib-vtk9-dev -> python3-vtk9 facet analyser which is a PV plugins depends also on paraview-dev. facet-analyser -> paraview-dev -> conflict with python3-vt

Bug#1078077: jupyterlab: Fail to get yarn configuration. node:internal/modules/cjs/loader:1148

2024-08-07 Thread PICCA Frederic-Emmanuel
the packaging of the next version is done here https://salsa.debian.org/js-team/node-jupyterlab in the branch merge-python-and-node to build it git clone -b merge-python-and-node https://salsa.debian.org/js-team/node-jupyterlab and cd node-jupyterlab gbp buildpackage --git-ignore-branch \

Bug#1078079: [Debian-pan-maintainers] Jupyterlab status ?

2024-08-06 Thread PICCA Frederic-Emmanuel
Running the upstream script I have this $ bash ./ci_script.sh + set -o pipefail + export YARN_ENABLE_GLOBAL_CACHE=1 + YARN_ENABLE_GLOBAL_CACHE=1 + export YARN_ENABLE_INLINE_BUILDS=1 + YARN_ENABLE_INLINE_BUILDS=1 + [[ '' != nonode ]] + python -c 'from jupyterlab.commands import build_check; buil

Bug#1078079: jupyterlab: please add autopkgtest

2024-08-06 Thread Picca Frédéric-Emmanuel
Source: jupyterlab Version: 4.0.11+ds1-2 Severity: normal Dear Maintainer, It would be great if we could run integration test with autopkgtests. The upstream run test test using the attached file -- System Information: Debian Release: 12.6 APT prefers stable-updates APT policy: (500, 'stab

Bug#1078077: jupyterlab: Fail to get yarn configuration. node:internal/modules/cjs/loader:1148

2024-08-06 Thread Picca Frédéric-Emmanuel
ODULE_NOT_FOUND', requireStack: [] } Node.js v20.15.1 [I 2024-08-06 18:03:27.952 ServerApp] jupyterlab | extension was successfully linked. [I 2024-08-06 18:03:27.955 ServerApp] Writing Jupyter server cookie secret to /home/picca/.local/share/jupyter/runtime/jupyter_cookie_secret [I 202

Bug#1077844: pkg-perl-tools: Last upload seems to be wrong

2024-08-03 Thread Picca Frédéric-Emmanuel
Package: pkg-perl-tools Version: 0.79 Severity: normal X-Debbugs-Cc: pi...@debian.org Dear Maintainer, When preparing one of my package, I did orange-canvas-core$ dpt prepare gbp pull gbp:info: Fetching from default remote for each branch gbp:info: Branch 'upstream' is already up to da

Bug#1077205: cython: generated code does not compile with gcc-14

2024-07-26 Thread Picca Frédéric-Emmanuel
Source: cython Version: 3.0.10+dfsg-5 Severity: important X-Debbugs-Cc: pi...@debian.org Dear Maintainer, while working on the pyfai packages, I got an FTBFS due to gcc-14. like this [34/91] cc -Isrc/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p -Isrc/pyFAI/ext -I../src/pyFAI/ext -I

Bug#1074472: sqlalchemy.exc.ArgumentError: expected schema argument to be a string

2024-06-29 Thread Picca Frédéric-Emmanuel
Package: gourmand Version: 1.1.0+really1.1.0~rc3-4 Severity: important X-Debbugs-Cc: pi...@debian.org Dear Maintainer, While trying the applciation I got this instead of a working application $ gourmand args = Namespace(db_url='', threads=False, gourmanddir='', thread_debug_interval=5.0, thread

Bug#1072576: coot: save its states in HOME.

2024-06-04 Thread Picca Frédéric-Emmanuel
Package: coot Version: 1.1.08+dfsg-3 Severity: normal X-Debbugs-Cc: pi...@debian.org Dear Maintainer, While using coot I found that it save it's states in these files DEBUG:: saving state to filename 0-coot.state.py State file 0-coot.state.py written. State file 0-coot-history.py written. State

Bug#1072285: RM: pytango [s390x] -- ROM; Allow migration to testing even during temporary removal of s390x support

2024-05-31 Thread Picca Frédéric-Emmanuel
Package: ftp.debian.org Severity: normal X-Debbugs-Cc: pyta...@packages.debian.org, pi...@debian.org Control: affects -1 + src:pytango User: ftp.debian@packages.debian.org Usertags: remove pytango's migration to testing is blocked by the lack of an s390x build; this lack is due to the build be

Bug#1039087: removing embeded version of yajl

2024-05-29 Thread PICCA Frederic-Emmanuel
Here the upstream point of view about the CVE. https://github.com/epics-base/epics-base/issues/405 check with the security team, if their analyse is ok ? Fred

Bug#1072115: ERROR:: Failure to read or parse /usr/share/coot/ui/coot-gtk4.ui

2024-05-28 Thread picca
I forgot to add that you start this script like this Test-Command: xvfb-run -s "-screen 0 1024x768x24 -ac +extension GLX +render -noreset" sh debian/tests/gui Depends: mesa-utils, coot, xauth, xvfb, Restrictions: allow-stderr

Bug#1072115: ERROR:: Failure to read or parse /usr/share/coot/ui/coot-gtk4.ui

2024-05-28 Thread Picca Frédéric-Emmanuel
Package: coot Version: 1.1.08+dfsg-2 Severity: important X-Debbugs-Cc: pi...@debian.org while trying to start coot, I get this error message. $ coot INFO:: built with GTK 4.12.5 pdd /usr/share/coot WARNING:: Coot REFMAC dictionary override COOT_REFMAC_LIB_DIR /usr/share/coot/lib failed to find

Bug#1039087: Info received (removing embeded version of yajl)

2024-05-28 Thread PICCA Frederic-Emmanuel
Here the diff between the epics version (debian patch unapplyed) and the current 2.1.0 version of yajl (debian patch unapplyed). not that simple...diff --git a/src/yajl.c b/src/yajl.c index d477893..fdad3f6 100644 --- a/src/yajl.c +++ b/src/yajl.c @@ -1,5 +1,5 @@ /* - * Copyright (c) 2007-2014,

Bug#1039087: removing embeded version of yajl

2024-05-28 Thread PICCA Frederic-Emmanuel
following a different path..., I added this in the rules file -export POSIX_CFLAGS+=$(CFLAGS) +export POSIX_CFLAGS+=$(CFLAGS) $(shell pkgconf --cflags yajl) export POSIX_CFLAGS+=$(CPPFLAGS) export POSIX_CPPFLAGS+=$(CPPFLAGS) -export POSIX_LDFLAGS+=$(LDFLAGS) +export POSIX_LDFLAGS+=$(LDFLAGS) $(sh

Bug#1063631: [Debian-pan-maintainers] Bug#1063631: closing 1063631

2024-04-17 Thread PICCA Frederic-Emmanuel
I am working on it at the upstream level need a few more days. Cheers Fred

Bug#1069144: ADvice about htis pocl issue on armel

2024-04-17 Thread PICCA Frederic-Emmanuel
Hello Andreas, I have another autopkgtest failure on armel with silx and pocl The content of check_atomic32 is def check_atomic32(device): try: ctx = pyopencl.Context(devices=[device]) except: return False, f"Unable to create context on {device}" else: queue

Bug#1069144: silx: [armel] autopkgtest opencl failure

2024-04-17 Thread Picca Frédéric-Emmanuel
Package: silx Version: 2.0.1+dfsg-1 Severity: normal X-Debbugs-Cc: pi...@debian.org Hello, the armel autopkgtest fail with this error message 1016s autopkgtest [22:49:50]: test opencl: [--- 1017s pocl warning: encountered incomplete implementation in ./lib/CL/clGetDeviceInfo.

Bug#1060318: Could be related to LLVM rather than PoCL: works with LLVM-15

2024-03-12 Thread PICCA Frederic-Emmanuel
bravo !!! This is team works. :)) Cheers Frederic

Bug#1065724: epics-base: FTBFS on amd64: Tests failed

2024-03-12 Thread PICCA Frederic-Emmanuel
Here an analyse of the FTBFS On the amd64, I have two failures dureing the test Test Summary Report --- testPVAServer.t(Wstat: 0 Tests: 0 Failed: 0) Parse errors: No plan found in TAP output Files=6, Tests=129, 1 wallclock secs ( 0.05 usr 0.01 sys + 0.09 cusr 0.06 csys

Bug#1060318: Info received (Bug#1060318: Info received (Bug#1060318: Info received (Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12))))

2024-03-11 Thread PICCA Frederic-Emmanuel
A workaround for now is to use this POCL_WORK_GROUP_METHOD=cbs Jerome is helping also here trying to understand the problem... https://github.com/silx-kit/silx/issues/4073

Bug#1060318: Info received (Bug#1060318: Info received (Bug#1060318: Info received (Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12))))

2024-03-11 Thread PICCA Frederic-Emmanuel
POCL_WORK_GROUP_METHOD=cbs python3 test.py make it works $ POCL_WORK_GROUP_METHOD=cbs python3 test.py [SubCFG] Form SubCFGs in bsort_all [SubCFG] Form SubCFGs in bsort_horizontal [SubCFG] Form SubCFGs in bsort_vertical [SubCFG] Form SubCFGs in bsort_book [SubCFG] Form SubCFGs in bsort_file [SubC

Bug#1060318: Info received (Bug#1060318: Info received (Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12)))

2024-03-11 Thread PICCA Frederic-Emmanuel
With latest version (PAS OK) $ dpkg -l | grep pocl ii libpocl2-common5.0-2.1 all common files for the pocl library ii libpocl2t64:amd64 5.0-2.1 amd64

Bug#1060318: Info received (Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12))

2024-03-11 Thread PICCA Frederic-Emmanuel
Debian12 (OK) $ dpkg -l | grep pocl ii libpocl2:amd64 3.1-3+deb12u1 amd64Portable Computing Language library ii libpocl2-common 3.1-3+deb12u1 all co

Bug#1060318: Info received (Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12))

2024-03-11 Thread PICCA Frederic-Emmanuel
On Debian12 it works out of the box $ POCL_DEBUG=1 python3 test.py [2024-03-11 10:05:31.837738936]POCL: in fn pocl_install_sigfpe_handler at line 229: | GENERAL | Installing SIGFPE handler... [2024-03-11 10:05:31.868890390]POCL: in fn POclCreateCommandQueue at line 98: | GENERAL | Crea

Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12)

2024-03-10 Thread PICCA Frederic-Emmanuel
We already had the warning message [2024-03-10 14:26:18.189651850]POCL: in fn void appendToProgramBuildLog(cl_program, unsigned int, std::string&) at line 111: | ERROR | warning: /home/picca/.cache/pocl/kcache/tempfile_msXjLw.cl:861:14: AVX vector argument of type '__priva

Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12)

2024-03-10 Thread PICCA Frederic-Emmanuel
Here a log with POCL_DEBUG=all picca@cush:/tmp$ python3 test.py [2024-03-10 14:22:19.462191847]POCL: in fn pocl_install_sigfpe_handler at line 265: | GENERAL | Installing SIGFPE handler... [2024-03-10 14:22:19.475550217]POCL: in fn POclCreateCommandQueue at line 103: | GENERAL

Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12)

2024-03-10 Thread PICCA Frederic-Emmanuel
111: | ERROR | warning: /home/picca/.cache/pocl/kcache/tempfile_NcEztR.cl:861:14: AVX vector argument of type '__private float8' (vector of 8 'float' values) without 'avx' enabled changes the ABI warning: /home/picca/.cache/pocl/kcache/tempfile_NcEztR.cl:893:14: AVX v

Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12)

2024-03-10 Thread PICCA Frederic-Emmanuel
Here a small script which trigger the errorfrom silx.image import medianfilter import numpy IMG = numpy.arange(1.0).reshape(100, 100) KERNEL = (1, 1) res = medianfilter.medfilt2d( image=IMG, kernel_size=KERNEL, engine="opencl", )

Bug#1060318: silx: autopkgtest failure with Python 3.12

2024-03-08 Thread PICCA Frederic-Emmanuel
=== platform linux -- Python 3.11.8, pytest-8.0.2, pluggy-1.4.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /home/picca/debian/science-team/pyvkfft plugins: anyio-4.2.0, dials-data-2.4.0, xvfb-3.0.0 collected 2

Bug#1065481: ITP: pynx -- Python tools for Nano-structures Crystallography

2024-03-05 Thread Picca Frédéric-Emmanuel
Package: wnpp Severity: wishlist Owner: Picca Frédéric-Emmanuel X-Debbugs-Cc: debian-de...@lists.debian.org, debian-pan-maintain...@alioth-lists.debian.net, pi...@debian.org * Package name: pynx Version : 2023.1.2-1 Upstream Contact: fa...@esrf.fr * URL : https

Bug#1060318: silx: autopkgtest failure with Python 3.12

2024-03-01 Thread PICCA Frederic-Emmanuel
With the silx 2.0.0 version the failire is located in the OpenCL part the backtrace is this one when running the median filter # build the packag eintht echroot and enter into it once build dgit --gbp sbuild --finished-build-commands '%SBUILD_SHELL' run this command to obtain the backtrace...

Bug#1063326: TypeError: first argument must be callable

2024-02-06 Thread Picca Frédéric-Emmanuel
Package: python3-sphinx Version: 5.3.0-4 Severity: important Dear Maintainer, Hello,, while preparing the new silx package, I got this error message from sphinx when calling this command line # build man pages pybuild --build -s custom -p $(PY3VER) --build-args="cd doc && env P

Bug#1063028: cglm: 9.2.0 is not API compatible with 9.1.0

2024-02-04 Thread Picca Frédéric-Emmanuel
Source: cglm Severity: important Dear Maintainer, While working on my 'hkl' package I now have an FTBFS due to the 0.9.2 cglm version The error is hkl-binoculars-geometry.c: In function ‘hkl_binoculars_parameter_transformation_get’: hkl-binoculars-geometry.c:45:45: error: incompatible type

Bug#1063027: devscripts: [build-rdeps] does not work anymore

2024-02-04 Thread Picca Frédéric-Emmanuel
Package: devscripts Version: 2.23.7 Severity: important Dear Maintainer, While reporting a bug against cglm, I tried build-rdeps but got this message... $ build-rdeps cglm Reverse Build-depends in experimental/main: --- Use of uninitialized value $source

Bug#1062979: tango-db: the upgraded version of tango-db is not compatible with maria-db from bookworm

2024-02-04 Thread Picca Frédéric-Emmanuel
Package: tango-db Severity: important X-Debbugs-Cc: pi...@debian.org Dear Maintainer, I upgraded a computer from bullseye to bookwork. tango-db was installed with the bulleyes version before the upgrade. The upgrade went fine, so I installed the tango-starter (bookworm version). BUT the tango-s

Bug#1043240: transition: pandas 1.5 -> 2.1 - please upload fixes

2024-01-30 Thread PICCA Frederic-Emmanuel
for dials it seems that the CI works with pandas 2.1 from experimental. https://ci.debian.net/packages/d/dials/unstable/amd64/41962612/#S4 - Le 30 Jan 24, à 9:05, Rebecca N. Palmer rebecca_pal...@zoho.com a écrit : > I intend to upload pandas 2.x to unstable soon. These packages have a > p

Bug#1061938: pyfai: Segfault when closing a dialg

2024-01-30 Thread Picca Frédéric-Emmanuel
Package: pyfai Version: 2023.9.0-1 Severity: important Dear Maintainer, Could you apply this patch in order to avoid a segfault in pyFAI-calib2 https://github.com/silx-kit/pyFAI/pull/2064 it correspond to this bug report https://github.com/silx-kit/pyFAI/issues/2047 Cheers -- System Informa

Bug#1060807: zfp: please compile zfp with -DBIT_STREAM_WORD_TYPE=uint8

2024-01-14 Thread Picca Frédéric-Emmanuel
Source: zfp Severity: important Dear Maintainer, since the upload of zfp 1.0.1, the test of hdf5plugin are failing look at here https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1059842 It seems to me that the zfp library should be recompile with the previous flag. thanks Frederic. PS: Il

Bug#1058794: [Debian-pan-maintainers] [Help] Re: python-future: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2024-01-04 Thread PICCA Frederic-Emmanuel
ok for me - Le 4 Jan 24, à 13:19, Alexandre Detiste alexandre.deti...@gmail.com a écrit : > Le jeu. 4 janv. 2024 à 07:48, Andreas Tille a écrit : >> > @Vincent: this one package "gtextfsm" is yours >> > do you green light an upload ? >> >> If you ask me the package is team maintained and a

Bug#1056792: bitshuffle: ftbfs with cython 3.0.x

2023-12-22 Thread PICCA Frederic-Emmanuel
It seems to me that the FTBFS was not due to cython 3.x but related to this bug https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1054716 now that this bug is solved, can you re run the build for bitshuffle ? Frederic

Bug#959964: What about moving bitshuffle into debian-science

2023-12-13 Thread picca
Would you mind to migrate bitshuffle under the Debian-science umbrella. this way I could fix the package (cython3, h5py, ...) issues and and upload the latest version. thanks for considering. Frederic

Bug#1058026: PyPI’s XML-RPC API is deprecated, causing errors when downloading packages.

2023-12-11 Thread Picca Frédéric-Emmanuel
Source: stdeb Severity: important X-Debbugs-Cc: pi...@debian.org Hello, while trying to use pupy-install, I got this error message /tmp$ pypi-download at Traceback (most recent call last): File "/usr/lib/python3/dist-packages/stdeb/transport.py", line 62, in request resp.raise_for_status()

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