Bug#1102130: node-ipydatagrid: Please provide the python module

2025-04-05 Thread Picca Frédéric-Emmanuel
Source: node-ipydatagrid Version: 1.4.0+~cs14.21.116-1 Severity: normal Dear Maintainer, A python module ipydatagrid is available in the sources. Could you provide it ? -- System Information: Debian Release: trixie/sid APT prefers unstable APT policy: (500, 'unstable'), (500, 'testing') Ar

Bug#1102115: ipywidgets: Provide the node packages for ipywidgets

2025-04-05 Thread Picca Frédéric-Emmanuel
Source: ipywidgets Version: 8.1.5-6 Severity: normal Dear Maintainer, It would be great if the ipywidget package could become the source package of the node-jupyter-widgets-xxx provider instead of the ipydatagrid. at least node-jupyter-widgets-base node-jupyter-widgets-base-manager node-jupyte

Bug#1100766: vtk9: could you activate a bunch of modules for paraview

2025-04-04 Thread Frederic-Emmanuel Picca
Package: vtk9 Version: 9.3.0+dfsg1-4 Severity: wishlist X-Debbugs-Cc: pi...@debian.org Dear Maintainer, I was trying to build paraview with the system vtk instead of the one embeded into paraview. but I end up with these errors. CMake Error at CMakeLists.txt:562 (message): Please reconfigure

Bug#1095742: cambalache: broken dependencies

2025-03-25 Thread Picca Frédéric-Emmanuel
Package: cambalache Version: 0.94.1-2 Followup-For: Bug #1095742 Dear Maintainer, $ cambalache pseudo-4.ui Traceback (most recent call last): File "/usr/bin/cambalache", line 42, in from cambalache.app import CmbApplication File "/usr/lib/python3/dist-packages/cambalache/__init__.py",

Bug#1100293: python-xarray: FTBFS: E RuntimeWarning: invalid value encountered in sqrt

2025-03-22 Thread picca
With the upload of the new zarr, the errors are now === short test summary info FAILED xarray/tests/test_groupby.py::test_dask_da_groupby_quantile - Failed: ... FAILED xarray/tests/test_weighted.py::test_weighted_operations_keep_attr[False-Tr

Bug#1101026: zarr: Could you package the latest 3.0.6 version

2025-03-22 Thread Picca Frédéric-Emmanuel
Source: zarr Severity: normal Dear Maintainer, I am wondering if the bug fix in zarr will not help with the xarray FTBFS[1]. In the changelog we see What's Changed fix: restore attrs del functionality by @ianhi in #2908 release: update release notes for 3.0.6 by @jhamman in #2923 and

Bug#1100762: paraview: FTBFS in unstable

2025-03-18 Thread Frederic-Emmanuel Picca
Package: paraview Version: 5.13.2+dfsg-3 Severity: important Tags: ftbfs X-Debbugs-Cc: pi...@debian.org Dear Maintainer, while trying to rebuild paraview in a clean unstable chroot, I got at least these erros: cd /build/reproducible-path/paraview-5.13.2+dfsg/build.python3.13/Wrapping/Python

Bug#1099671: libboost-numpy1.83.0: the numpy2 support is not complete

2025-03-15 Thread Frederic-Emmanuel Picca
Package: libboost-numpy1.83.0 Version: 1.83.0-4.1+b1 Severity: important X-Debbugs-Cc: pi...@debian.org Dear Maintainer, I am trying to fix the autopkgtest of cctbx but I end up with a segfault here 0 PyArray_GetCastingImpl (from=0x9fb020 , to=to@entry=0xe4dae0) at ../numpy/_core/src/multiarra

Bug#1100176: debci: How to deal with a ban when testing a remote API ?

2025-03-12 Thread Picca Frédéric-Emmanuel
Package: debci Severity: normal X-Debbugs-Cc: pi...@debian.org Hello I am trying to fix the autopkgtest of python-mp-api[1] . It seems that the test are failling to a ban of our IP adresses. 183s ERRORS 183s ___

Bug#1100173: ModuleNotFoundError: No module named 'silver_platter.debian'; 'silver_platter' is not a package

2025-03-12 Thread Picca Frédéric-Emmanuel
Package: silver-platter Version: 0.5.44-1+b1 Severity: important X-Debbugs-Cc: pi...@debian.org Hello, picca@cush:/tmp$ debian-svp new-upstream libobjcryst Traceback (most recent call last): File "/usr/bin/debian-svp", line 33, in sys.exit(load_entry_point('silver-

Bug#1099741: dgit: does not work out of the box with the rosettasciio repository

2025-03-07 Thread Picca Frédéric-Emmanuel
':!/.gitignore' ':!*/.gitignore' dgit: dgit: ... debian/patches is missing; perhaps this is a patch queue branch? picca@page:~/debian/science-team/hyperspy$ git diff 4f3547c9556f7313400bf895d6a00bce3b8e6ee5 HEAD -- :/ ':!debian' ':!/.gitignore' ':!

Bug#1099126: sbuild: The repository 'http://deb.debian.org/debian UNRELEASED Release' does not have a Release file.

2025-03-01 Thread Picca Frédéric-Emmanuel
[17:20:31]: host page; command line: /usr/bin/autopkgtest /home/picca/debian/science-team/pyfai_2025.01-1.dsc /home/picca/debian/science-team/pyfai_2025.01-1_amd64.changes -- unshare --release UNRELEASED --arch amd64 : failure: ['mmdebstrap', '--variant=apt', '--skip

Bug#1099038: Acknowledgement (silx: Permission denied: '/usr/lib/python3/dist-packages/silx/pytest-cache-files-0lxt05lh')

2025-02-28 Thread picca
It seems that the pytest cache directory try to write under a read only part of the system... Testing with python3.13: = test session starts == platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13 cachedir:

Bug#1099038: silx: Permission denied: '/usr/lib/python3/dist-packages/silx/pytest-cache-files-0lxt05lh'

2025-02-27 Thread Picca Frédéric-Emmanuel
Package: silx Version: 1.1.0+dfsg-5 Severity: important Dear Maintainer, The autopkgtests fail with this error message 477s File "/usr/lib/python3/dist-packages/_pytest/cacheprovider.py", line 184, in set 477s self._mkdir(path.parent) 477s File "/usr/lib/python3/dist-packages/_pytest/ca

Bug#1092406: [Debian-pan-maintainers] Bug#1092406: ifeffit: diff for NMU version 2:1.2.11d-12.7

2025-02-16 Thread PICCA Frederic-Emmanuel
thanks a lot, it is ok with this NMU, you can also commit to the git repositoy if you want :). https://salsa.debian.org/science-team/ifeffit Cheers Fred

Bug#1075228: Fixing lisaac or is it time to remove it?

2025-02-15 Thread picca
Hello Andreas, you can fill an RM request. I think also that I do not have any time for this software which I do not use anymore myself... I switched to haskell ;). Cheers Fred

Bug#1092998: [Debian-pan-maintainers] Bug#1092998: pyvkfft-cuda: rebuild for python3.13 as default python version

2025-01-14 Thread PICCA Frederic-Emmanuel
Is it possible to make it binNMUable ? Fred - Le 14 Jan 25, à 13:20, Emilio Pozuelo Monfort po...@debian.org a écrit : > Package: pyvkfft-cuda > Version: 2024.1.4+ds1-4 > Severity: serious > > Hi, > > The ongoing python3.13 as python3 interpreter causes your package to be > uninstallable,

Bug#1087738: [Debian-pan-maintainers] Bug#1087738: Incomplete patch

2024-12-26 Thread PICCA Frederic-Emmanuel
for more details): - hkl-0.1.0.2 (lib) (first run) - hkl-0.1.0.2 (exe:binoculars-ng) (first run) Preprocessing library for hkl-0.1.0.2.. Building library for hkl-0.1.0.2.. [18 of 36] Compiling Hkl.H5 ( src/Hkl/H5.hs, /home/picca/src/repo.or.cz/hkl/binoculars-ng/dist-newstyle/build/x86_64

Bug#1087855: cli11: autopkgtest regression due to new CMake deprecation warning

2024-11-27 Thread picca
Hello Jose Luis, is it possible to solve this bug in order to avoid a bunch of reverse dependency removal. thanks a lot Frédéric-Emmanuel

Bug#1086956: scipy: how to provide the pooch data's ?

2024-11-07 Thread Picca Frédéric-Emmanuel
Source: scipy Severity: normal X-Debbugs-Cc: pi...@debian.org Hello, I am working on package which require the ascent.dat in order to run its test. /usr/lib/python3/dist-packages/scipy/datasets/_fetchers.py:71: in ascent fname = fetch_data("ascent.dat") _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

Bug#1082845: Info received (Bug#1082845: rocm-opencl-icd: CommandLine Error: Option 'sanitizer-early-opt-ep' registered more than once!)

2024-10-01 Thread picca
graph... Checking test dependency graph end test 1 Start 1: clpeak_test_run 1: Test command: /home/picca/tmp/clpeak-1.1.2/obj-x86_64-linux-gnu/clpeak 1: Working Directory: /home/picca/tmp/clpeak-1.1.2/obj-x86_64-linux-gnu 1: Test timeout computed to be: 1000 1: 1: Platform: AMD Accelerated

Bug#1082845: rocm-opencl-icd: CommandLine Error: Option 'sanitizer-early-opt-ep' registered more than once!

2024-10-01 Thread picca
Le 2024-09-30 08:57, Cordell Bloor a écrit : Hi Fred, Hello Thanks. Does this clpeak work for you? Or are you experiencing this same bug? I am the one who reported the bug, so yes I am affected by this same bug ;) We could try reviewing the package lists of systems where it works and wh

Bug#1082845: rocm-opencl-icd: CommandLine Error: Option 'sanitizer-early-opt-ep' registered more than once!

2024-09-28 Thread picca
Hello, In any case, it works on my machine. I cannot reproduce the bug, so it will require more investigation to determine why you're encountering this problem and I am not. What kind of investigation ?. I can test a few things. another point It would be great if the rocm-opencl-icd packag

Bug#1082878: python3-gemmi: Please add the dist-info data's

2024-09-27 Thread Picca Frédéric-Emmanuel
Package: python3-gemmi Severity: important X-Debbugs-Cc: pi...@debian.org Dear Maintainer, While preparing the new version of dials, I discoverd that the gemmi dependency was not automatically generated during the packaging process. Indeed, python3-gemmi does not provide the necessary dist-info

Bug#1082845: rocm-opencl-icd: CommandLine Error: Option 'sanitizer-early-opt-ep' registered more than once!

2024-09-27 Thread Frederic-Emmanuel Picca
Package: rocm-opencl-icd Version: 5.7.1-5 Severity: important X-Debbugs-Cc: pi...@debian.org Dear Maintainer, I just installed rocm-opencl-icd and try to run the clpeak program. But I get this error message $ clpeak : CommandLine Error: Option 'sanitizer-early-opt-ep' registered more than once!

Bug#1082027: ITP: webext-folder-account -- Manage folder accounts

2024-09-17 Thread PICCA Frederic-Emmanuel
- Le 17 Sep 24, à 20:02, Mechtilde Stehmann mechti...@debian.org a écrit : > Package: wnpp > Severity: wishlist > Owner: Mechtilde Stehmann > X-Debbugs-Cc: debian-de...@lists.debian.org, mechti...@debian.org > > * Package name: webext-folder-account > Version : 12.0 > Upstre

Bug#1078439: bornagain: error while loading shared libraries: _libBornAgainGUI.so: cannot open shared object file: No such file or directory

2024-08-10 Thread Picca Frédéric-Emmanuel
Package: bornagain Version: 22~git20240726093306.cb41cc4+ds3-1 Severity: important X-Debbugs-Cc: pi...@debian.org Dear Maintainer, While trying to use bornagain, I got this error message $ bornagain bornagain: error while loading shared libraries: _libBornAgainGUI.so: cannot open shared object

Bug#1078268: [Debian-pan-maintainers] Bug#1078268: pyfai: please make the package build reproducible

2024-08-09 Thread PICCA Frederic-Emmanuel
> That is true. I don't consider the bug to be the use of a temporary > directory, > but instead the embedding of build paths. I'll do some more investigation to > try to figure out whether that can be resolved within the build toolchain. thanks > It appears my fix here is incomplete or inaccu

Bug#1078268: [Debian-pan-maintainers] Bug#1078268: pyfai: please make the package build reproducible

2024-08-09 Thread PICCA Frederic-Emmanuel
> The meson-python build generates and uses a temporary, randomized build > directory path only when no build-dir setting is already configured. So we > may > be able to resolve this problem by choosing an appropriate static build-dir. why not fixing meson-python directly. This way it is simp

Bug#1078268: [Debian-pan-maintainers] Bug#1078268: pyfai: please make the package build reproducible

2024-08-09 Thread PICCA Frederic-Emmanuel
If you are part of the Debian science just push to the repository. It is easyer for me to revert from git, than to remember to check for MR :) thanks a lot for these investigation. it is very appreciable Frederic - Le 9 Aoû 24, à 13:18, James Addison via Debian-pan-maintainers debian-p

Bug#982601: python3-paraview Conflicts: python3-vtk9

2024-08-08 Thread PICCA Frederic-Emmanuel
Hello, I am the facet-analyser maintainer/upstream (support) If fact the conflict comes from facet-analyser -> libinsighttoolkit5-dev -> lib-vtk9-dev -> python3-vtk9 facet analyser which is a PV plugins depends also on paraview-dev. facet-analyser -> paraview-dev -> conflict with python3-vt

Bug#1078077: jupyterlab: Fail to get yarn configuration. node:internal/modules/cjs/loader:1148

2024-08-07 Thread PICCA Frederic-Emmanuel
the packaging of the next version is done here https://salsa.debian.org/js-team/node-jupyterlab in the branch merge-python-and-node to build it git clone -b merge-python-and-node https://salsa.debian.org/js-team/node-jupyterlab and cd node-jupyterlab gbp buildpackage --git-ignore-branch \

Bug#1078079: [Debian-pan-maintainers] Jupyterlab status ?

2024-08-06 Thread PICCA Frederic-Emmanuel
Running the upstream script I have this $ bash ./ci_script.sh + set -o pipefail + export YARN_ENABLE_GLOBAL_CACHE=1 + YARN_ENABLE_GLOBAL_CACHE=1 + export YARN_ENABLE_INLINE_BUILDS=1 + YARN_ENABLE_INLINE_BUILDS=1 + [[ '' != nonode ]] + python -c 'from jupyterlab.commands import build_check; buil

Bug#1078079: jupyterlab: please add autopkgtest

2024-08-06 Thread Picca Frédéric-Emmanuel
Source: jupyterlab Version: 4.0.11+ds1-2 Severity: normal Dear Maintainer, It would be great if we could run integration test with autopkgtests. The upstream run test test using the attached file -- System Information: Debian Release: 12.6 APT prefers stable-updates APT policy: (500, 'stab

Bug#1078077: jupyterlab: Fail to get yarn configuration. node:internal/modules/cjs/loader:1148

2024-08-06 Thread Picca Frédéric-Emmanuel
ODULE_NOT_FOUND', requireStack: [] } Node.js v20.15.1 [I 2024-08-06 18:03:27.952 ServerApp] jupyterlab | extension was successfully linked. [I 2024-08-06 18:03:27.955 ServerApp] Writing Jupyter server cookie secret to /home/picca/.local/share/jupyter/runtime/jupyter_cookie_secret [I 202

Bug#1077844: pkg-perl-tools: Last upload seems to be wrong

2024-08-03 Thread Picca Frédéric-Emmanuel
Package: pkg-perl-tools Version: 0.79 Severity: normal X-Debbugs-Cc: pi...@debian.org Dear Maintainer, When preparing one of my package, I did orange-canvas-core$ dpt prepare gbp pull gbp:info: Fetching from default remote for each branch gbp:info: Branch 'upstream' is already up to da

Bug#1077205: cython: generated code does not compile with gcc-14

2024-07-26 Thread Picca Frédéric-Emmanuel
Source: cython Version: 3.0.10+dfsg-5 Severity: important X-Debbugs-Cc: pi...@debian.org Dear Maintainer, while working on the pyfai packages, I got an FTBFS due to gcc-14. like this [34/91] cc -Isrc/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p -Isrc/pyFAI/ext -I../src/pyFAI/ext -I

Bug#1074472: sqlalchemy.exc.ArgumentError: expected schema argument to be a string

2024-06-29 Thread Picca Frédéric-Emmanuel
Package: gourmand Version: 1.1.0+really1.1.0~rc3-4 Severity: important X-Debbugs-Cc: pi...@debian.org Dear Maintainer, While trying the applciation I got this instead of a working application $ gourmand args = Namespace(db_url='', threads=False, gourmanddir='', thread_debug_interval=5.0, thread

Bug#1072576: coot: save its states in HOME.

2024-06-04 Thread Picca Frédéric-Emmanuel
Package: coot Version: 1.1.08+dfsg-3 Severity: normal X-Debbugs-Cc: pi...@debian.org Dear Maintainer, While using coot I found that it save it's states in these files DEBUG:: saving state to filename 0-coot.state.py State file 0-coot.state.py written. State file 0-coot-history.py written. State

Bug#1072285: RM: pytango [s390x] -- ROM; Allow migration to testing even during temporary removal of s390x support

2024-05-31 Thread Picca Frédéric-Emmanuel
Package: ftp.debian.org Severity: normal X-Debbugs-Cc: pyta...@packages.debian.org, pi...@debian.org Control: affects -1 + src:pytango User: ftp.debian@packages.debian.org Usertags: remove pytango's migration to testing is blocked by the lack of an s390x build; this lack is due to the build be

Bug#1039087: removing embeded version of yajl

2024-05-29 Thread PICCA Frederic-Emmanuel
Here the upstream point of view about the CVE. https://github.com/epics-base/epics-base/issues/405 check with the security team, if their analyse is ok ? Fred

Bug#1072115: ERROR:: Failure to read or parse /usr/share/coot/ui/coot-gtk4.ui

2024-05-28 Thread picca
I forgot to add that you start this script like this Test-Command: xvfb-run -s "-screen 0 1024x768x24 -ac +extension GLX +render -noreset" sh debian/tests/gui Depends: mesa-utils, coot, xauth, xvfb, Restrictions: allow-stderr

Bug#1072115: ERROR:: Failure to read or parse /usr/share/coot/ui/coot-gtk4.ui

2024-05-28 Thread Picca Frédéric-Emmanuel
Package: coot Version: 1.1.08+dfsg-2 Severity: important X-Debbugs-Cc: pi...@debian.org while trying to start coot, I get this error message. $ coot INFO:: built with GTK 4.12.5 pdd /usr/share/coot WARNING:: Coot REFMAC dictionary override COOT_REFMAC_LIB_DIR /usr/share/coot/lib failed to find

Bug#1039087: Info received (removing embeded version of yajl)

2024-05-28 Thread PICCA Frederic-Emmanuel
Here the diff between the epics version (debian patch unapplyed) and the current 2.1.0 version of yajl (debian patch unapplyed). not that simple...diff --git a/src/yajl.c b/src/yajl.c index d477893..fdad3f6 100644 --- a/src/yajl.c +++ b/src/yajl.c @@ -1,5 +1,5 @@ /* - * Copyright (c) 2007-2014,

Bug#1039087: removing embeded version of yajl

2024-05-28 Thread PICCA Frederic-Emmanuel
following a different path..., I added this in the rules file -export POSIX_CFLAGS+=$(CFLAGS) +export POSIX_CFLAGS+=$(CFLAGS) $(shell pkgconf --cflags yajl) export POSIX_CFLAGS+=$(CPPFLAGS) export POSIX_CPPFLAGS+=$(CPPFLAGS) -export POSIX_LDFLAGS+=$(LDFLAGS) +export POSIX_LDFLAGS+=$(LDFLAGS) $(sh

Bug#1063631: [Debian-pan-maintainers] Bug#1063631: closing 1063631

2024-04-17 Thread PICCA Frederic-Emmanuel
I am working on it at the upstream level need a few more days. Cheers Fred

Bug#1069144: ADvice about htis pocl issue on armel

2024-04-17 Thread PICCA Frederic-Emmanuel
Hello Andreas, I have another autopkgtest failure on armel with silx and pocl The content of check_atomic32 is def check_atomic32(device): try: ctx = pyopencl.Context(devices=[device]) except: return False, f"Unable to create context on {device}" else: queue

Bug#1069144: silx: [armel] autopkgtest opencl failure

2024-04-17 Thread Picca Frédéric-Emmanuel
Package: silx Version: 2.0.1+dfsg-1 Severity: normal X-Debbugs-Cc: pi...@debian.org Hello, the armel autopkgtest fail with this error message 1016s autopkgtest [22:49:50]: test opencl: [--- 1017s pocl warning: encountered incomplete implementation in ./lib/CL/clGetDeviceInfo.

Bug#1060318: Could be related to LLVM rather than PoCL: works with LLVM-15

2024-03-12 Thread PICCA Frederic-Emmanuel
bravo !!! This is team works. :)) Cheers Frederic

Bug#1065724: epics-base: FTBFS on amd64: Tests failed

2024-03-12 Thread PICCA Frederic-Emmanuel
Here an analyse of the FTBFS On the amd64, I have two failures dureing the test Test Summary Report --- testPVAServer.t(Wstat: 0 Tests: 0 Failed: 0) Parse errors: No plan found in TAP output Files=6, Tests=129, 1 wallclock secs ( 0.05 usr 0.01 sys + 0.09 cusr 0.06 csys

Bug#1060318: Info received (Bug#1060318: Info received (Bug#1060318: Info received (Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12))))

2024-03-11 Thread PICCA Frederic-Emmanuel
A workaround for now is to use this POCL_WORK_GROUP_METHOD=cbs Jerome is helping also here trying to understand the problem... https://github.com/silx-kit/silx/issues/4073

Bug#1060318: Info received (Bug#1060318: Info received (Bug#1060318: Info received (Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12))))

2024-03-11 Thread PICCA Frederic-Emmanuel
POCL_WORK_GROUP_METHOD=cbs python3 test.py make it works $ POCL_WORK_GROUP_METHOD=cbs python3 test.py [SubCFG] Form SubCFGs in bsort_all [SubCFG] Form SubCFGs in bsort_horizontal [SubCFG] Form SubCFGs in bsort_vertical [SubCFG] Form SubCFGs in bsort_book [SubCFG] Form SubCFGs in bsort_file [SubC

Bug#1060318: Info received (Bug#1060318: Info received (Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12)))

2024-03-11 Thread PICCA Frederic-Emmanuel
With latest version (PAS OK) $ dpkg -l | grep pocl ii libpocl2-common5.0-2.1 all common files for the pocl library ii libpocl2t64:amd64 5.0-2.1 amd64

Bug#1060318: Info received (Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12))

2024-03-11 Thread PICCA Frederic-Emmanuel
Debian12 (OK) $ dpkg -l | grep pocl ii libpocl2:amd64 3.1-3+deb12u1 amd64Portable Computing Language library ii libpocl2-common 3.1-3+deb12u1 all co

Bug#1060318: Info received (Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12))

2024-03-11 Thread PICCA Frederic-Emmanuel
On Debian12 it works out of the box $ POCL_DEBUG=1 python3 test.py [2024-03-11 10:05:31.837738936]POCL: in fn pocl_install_sigfpe_handler at line 229: | GENERAL | Installing SIGFPE handler... [2024-03-11 10:05:31.868890390]POCL: in fn POclCreateCommandQueue at line 98: | GENERAL | Crea

Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12)

2024-03-10 Thread PICCA Frederic-Emmanuel
We already had the warning message [2024-03-10 14:26:18.189651850]POCL: in fn void appendToProgramBuildLog(cl_program, unsigned int, std::string&) at line 111: | ERROR | warning: /home/picca/.cache/pocl/kcache/tempfile_msXjLw.cl:861:14: AVX vector argument of type '__priva

Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12)

2024-03-10 Thread PICCA Frederic-Emmanuel
Here a log with POCL_DEBUG=all picca@cush:/tmp$ python3 test.py [2024-03-10 14:22:19.462191847]POCL: in fn pocl_install_sigfpe_handler at line 265: | GENERAL | Installing SIGFPE handler... [2024-03-10 14:22:19.475550217]POCL: in fn POclCreateCommandQueue at line 103: | GENERAL

Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12)

2024-03-10 Thread PICCA Frederic-Emmanuel
111: | ERROR | warning: /home/picca/.cache/pocl/kcache/tempfile_NcEztR.cl:861:14: AVX vector argument of type '__private float8' (vector of 8 'float' values) without 'avx' enabled changes the ABI warning: /home/picca/.cache/pocl/kcache/tempfile_NcEztR.cl:893:14: AVX v

Bug#1060318: Info received (silx: autopkgtest failure with Python 3.12)

2024-03-10 Thread PICCA Frederic-Emmanuel
Here a small script which trigger the errorfrom silx.image import medianfilter import numpy IMG = numpy.arange(1.0).reshape(100, 100) KERNEL = (1, 1) res = medianfilter.medfilt2d( image=IMG, kernel_size=KERNEL, engine="opencl", )

Bug#1060318: silx: autopkgtest failure with Python 3.12

2024-03-08 Thread PICCA Frederic-Emmanuel
=== platform linux -- Python 3.11.8, pytest-8.0.2, pluggy-1.4.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /home/picca/debian/science-team/pyvkfft plugins: anyio-4.2.0, dials-data-2.4.0, xvfb-3.0.0 collected 2

Bug#1065481: ITP: pynx -- Python tools for Nano-structures Crystallography

2024-03-05 Thread Picca Frédéric-Emmanuel
Package: wnpp Severity: wishlist Owner: Picca Frédéric-Emmanuel X-Debbugs-Cc: debian-de...@lists.debian.org, debian-pan-maintain...@alioth-lists.debian.net, pi...@debian.org * Package name: pynx Version : 2023.1.2-1 Upstream Contact: fa...@esrf.fr * URL : https

Bug#1060318: silx: autopkgtest failure with Python 3.12

2024-03-01 Thread PICCA Frederic-Emmanuel
With the silx 2.0.0 version the failire is located in the OpenCL part the backtrace is this one when running the median filter # build the packag eintht echroot and enter into it once build dgit --gbp sbuild --finished-build-commands '%SBUILD_SHELL' run this command to obtain the backtrace...

Bug#1063326: TypeError: first argument must be callable

2024-02-06 Thread Picca Frédéric-Emmanuel
Package: python3-sphinx Version: 5.3.0-4 Severity: important Dear Maintainer, Hello,, while preparing the new silx package, I got this error message from sphinx when calling this command line # build man pages pybuild --build -s custom -p $(PY3VER) --build-args="cd doc && env P

Bug#1063028: cglm: 9.2.0 is not API compatible with 9.1.0

2024-02-04 Thread Picca Frédéric-Emmanuel
Source: cglm Severity: important Dear Maintainer, While working on my 'hkl' package I now have an FTBFS due to the 0.9.2 cglm version The error is hkl-binoculars-geometry.c: In function ‘hkl_binoculars_parameter_transformation_get’: hkl-binoculars-geometry.c:45:45: error: incompatible type

Bug#1063027: devscripts: [build-rdeps] does not work anymore

2024-02-04 Thread Picca Frédéric-Emmanuel
Package: devscripts Version: 2.23.7 Severity: important Dear Maintainer, While reporting a bug against cglm, I tried build-rdeps but got this message... $ build-rdeps cglm Reverse Build-depends in experimental/main: --- Use of uninitialized value $source

Bug#1062979: tango-db: the upgraded version of tango-db is not compatible with maria-db from bookworm

2024-02-04 Thread Picca Frédéric-Emmanuel
Package: tango-db Severity: important X-Debbugs-Cc: pi...@debian.org Dear Maintainer, I upgraded a computer from bullseye to bookwork. tango-db was installed with the bulleyes version before the upgrade. The upgrade went fine, so I installed the tango-starter (bookworm version). BUT the tango-s

Bug#1043240: transition: pandas 1.5 -> 2.1 - please upload fixes

2024-01-30 Thread PICCA Frederic-Emmanuel
for dials it seems that the CI works with pandas 2.1 from experimental. https://ci.debian.net/packages/d/dials/unstable/amd64/41962612/#S4 - Le 30 Jan 24, à 9:05, Rebecca N. Palmer rebecca_pal...@zoho.com a écrit : > I intend to upload pandas 2.x to unstable soon. These packages have a > p

Bug#1061938: pyfai: Segfault when closing a dialg

2024-01-30 Thread Picca Frédéric-Emmanuel
Package: pyfai Version: 2023.9.0-1 Severity: important Dear Maintainer, Could you apply this patch in order to avoid a segfault in pyFAI-calib2 https://github.com/silx-kit/pyFAI/pull/2064 it correspond to this bug report https://github.com/silx-kit/pyFAI/issues/2047 Cheers -- System Informa

Bug#1060807: zfp: please compile zfp with -DBIT_STREAM_WORD_TYPE=uint8

2024-01-14 Thread Picca Frédéric-Emmanuel
Source: zfp Severity: important Dear Maintainer, since the upload of zfp 1.0.1, the test of hdf5plugin are failing look at here https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1059842 It seems to me that the zfp library should be recompile with the previous flag. thanks Frederic. PS: Il

Bug#1058794: [Debian-pan-maintainers] [Help] Re: python-future: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2024-01-04 Thread PICCA Frederic-Emmanuel
ok for me - Le 4 Jan 24, à 13:19, Alexandre Detiste alexandre.deti...@gmail.com a écrit : > Le jeu. 4 janv. 2024 à 07:48, Andreas Tille a écrit : >> > @Vincent: this one package "gtextfsm" is yours >> > do you green light an upload ? >> >> If you ask me the package is team maintained and a

Bug#1056792: bitshuffle: ftbfs with cython 3.0.x

2023-12-22 Thread PICCA Frederic-Emmanuel
It seems to me that the FTBFS was not due to cython 3.x but related to this bug https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1054716 now that this bug is solved, can you re run the build for bitshuffle ? Frederic

Bug#959964: What about moving bitshuffle into debian-science

2023-12-13 Thread picca
Would you mind to migrate bitshuffle under the Debian-science umbrella. this way I could fix the package (cython3, h5py, ...) issues and and upload the latest version. thanks for considering. Frederic

Bug#1058026: PyPI’s XML-RPC API is deprecated, causing errors when downloading packages.

2023-12-11 Thread Picca Frédéric-Emmanuel
Source: stdeb Severity: important X-Debbugs-Cc: pi...@debian.org Hello, while trying to use pupy-install, I got this error message /tmp$ pypi-download at Traceback (most recent call last): File "/usr/lib/python3/dist-packages/stdeb/transport.py", line 62, in request resp.raise_for_status()

Bug#1055915: sbuild-debian-developer-setup: Can not create an unstable chroot

2023-11-14 Thread picca
A workaround is to set DEBOOTSTRAP_DIR sudo DEBOOTSTRAP_DIR=/usr/share/debootstrap sbuild-debian-developer-setup

Bug#1055915: sbuild-debian-developer-setup: Can not create an unstable chroot

2023-11-14 Thread Picca Frédéric-Emmanuel
-setup info: L'utilisateur « picca » appartient déjà au groupe « sbuild ». I: SUITE: unstable I: TARGET: /srv/chroot/unstable-amd64-sbuild I: MIRROR: http://localhost:3142/deb.debian.org/debian I: Running debootstrap --arch=amd64 --variant=buildd --verbose --include=fakeroot,build-essential,eatm

Bug#1053701: cp: cannot stat '/etc/fonts/fonts.conf': No such file or directory

2023-10-09 Thread Picca Frédéric-Emmanuel
Package: linux-image-6.1.0-13-amd64 Version: 6.1.55-1 Severity: normal Dear Maintainer, I am preparing a virtual machine wher eI install the linux-headers-amd54 package. But it failed with this error message Setting up linux-image-6.1.0-13-amd64 (6.1.55-1) ...^M I: /vmlinuz is now a symlink to

Bug#1051781: python3-h5py: where is the egg files

2023-09-19 Thread Picca Frédéric-Emmanuel
Package: python3-h5py Version: 3.7.0-8 Followup-For: Bug #1051781 X-Debbugs-Cc: pi...@debian.org Dear Maintainer, If I create a link ln -s h5py._debian_h5py_serial-3.7.0.dist-info h5py-3.7.0.dist-info under /usr/lib/python3/dist-packages It solves my issue. So my question is should the python

Bug#1051935: /usr/lib/x86_64-linux-gnu/libg3d/plugins/import/imp_vrml.so: undefined symbol: yywrap

2023-09-14 Thread Frederic-Emmanuel Picca
Package: libg3d-plugins Version: 0.0.8-36 Severity: important X-Debbugs-Cc: pi...@debian.org Dear Maintainer, I am the maintainer of the hkl package. When I use the ghkl librarry, I get this error message (ghkl:1336510): LibG3D-WARNING **: 15:03:32.967: libg3d: plugins: failed to load /usr/lib

Bug#1051781: python3-h5py: where is the egg files

2023-09-12 Thread Picca Frédéric-Emmanuel
Package: python3-h5py Version: 3.7.0-8 Severity: important X-Debbugs-Cc: pi...@debian.org Dear Maintainer, I am thre maintainer of silx This package depende of python3-h5py and contain entry points. The build is ok, but once installed I get this error message when I try to start the applicati

Bug#1051771: RM: genx [arm64 armel armhf i386 mips64el s390x] -- ROM; failure due to the numba dependency

2023-09-12 Thread Picca Frédéric-Emmanuel
Package: ftp.debian.org Severity: normal User: ftp.debian@packages.debian.org Usertags: remove X-Debbugs-Cc: g...@packages.debian.org, pi...@debian.org Control: affects -1 + src:genx Hello, the new version of genx added test about the numba part. Currently the numba package is in bad shape f

Bug#1051767: RM: bornagain [arm64 armel armhf i386 ppc64el s390x] -- ROM; not yet supported by upstream

2023-09-12 Thread Picca Frédéric-Emmanuel
Package: ftp.debian.org Severity: normal User: ftp.debian@packages.debian.org Usertags: remove X-Debbugs-Cc: bornag...@packages.debian.org, pi...@debian.org Control: affects -1 + src:bornagain previously the unit test were not activated. So now we have a real picture of what is working and w

Bug#1051614: onednn: FTBFS on bookworm

2023-09-10 Thread Picca Frédéric-Emmanuel
Source: onednn Severity: normal Dear Maintainer, I am reparing local backports of onednn on bookwork in order to backports pytorch-cuda for my institut. But it FTBFS due to missing symbols. dpkg-gensymbols: warning: debian/libdnnl2/DEBIAN/symbols doesn't match completely debian/libdnnl2.symbo

Bug#1051342: Issue with the genx software

2023-09-06 Thread PICCA Frederic-Emmanuel
Hello, here you should find the informations. platform: Debina unstable python: ~$ python3 Python 3.11.5 (main, Aug 29 2023, 15:31:31) [GCC 13.2.0] on linux Type "help", "copyright", "credits" or "license" for more information. >>> $ dpkg -l | grep wx ii libwxbase3.2-1:amd64

Bug#1051342: Issue with the genx software

2023-09-06 Thread PICCA Frederic-Emmanuel
Hello, I am preparing the packaging of genx 3.6.22. When I try to quit the application I have this error message CRITICAL: uncought python error Traceback (most recent call last): File "/usr/lib/python3/dist-packages/genx/gui/main_window.py", line 1418, in eh_mb_quit if event.CanVeto() and

Bug#1051342: genx: Can not quit the application from the Menu

2023-09-06 Thread Picca Frédéric-Emmanuel
Source: genx Severity: normal X-Debbugs-Cc: pi...@debian.org Dear Maintainer, If I try to quite the application with the menu quit, I get this CRITICAL: uncought python error Traceback (most recent call last): File "/usr/lib/python3/dist-packages/genx/gui/main_window.py", line 1418, in eh_mb_

Bug#1042949: /usr/bin/apply-multiarch-hints: apply-multiarch-hints failed with TypeError

2023-08-03 Thread Picca Frédéric-Emmanuel
Package: lintian-brush Version: 0.149 Severity: normal File: /usr/bin/apply-multiarch-hints Dear Maintainer, I try to use the multiarch hints but I get this error message Downloading new version of multi-arch hints. Traceback (most recent call last): File "/usr/bin/apply-multiarch-hints", line

Bug#1042878: FTBFS: on all architectures

2023-08-02 Thread Picca Frédéric-Emmanuel
Source: epics-base Severity: important Dear Maintainer, please fix these FTBFS -- System Information: Debian Release: trixie/sid APT prefers unstable APT policy: (500, 'unstable'), (1, 'experimental') Architecture: amd64 (x86_64) Kernel: Linux 6.4.0-1-amd64 (SMP w/4 CPU threads; PREEMPT) Ke

Bug#1042830: lintian-brush: refuse to proceed when files affected by gitattributes

2023-08-01 Thread Picca Frédéric-Emmanuel
Package: lintian-brush Version: 0.149 Severity: normal Dear Maintainer, I am preparing the new hyperspy package but when I try to run lintian-brush on it, I get this message $ lintian-brush /home/picca/debian/science-team/hyperspy: Please commit pending changes and remove unknown files

Bug#1041803: [Debian-pan-maintainers] Bug#1041803: hyperspy: FTBFS test_image fails

2023-08-01 Thread PICCA Frederic-Emmanuel
the old and new hyperspy is not compatible with imagio > 0.28. I kindly opened a bug report about the situation at the upstream git repository.

Bug#1042740: [Debian-pan-maintainers] Bug#1042740: dmrgpp: Please package the new 6.04 version

2023-07-31 Thread PICCA Frederic-Emmanuel
I filled a bug report about the new upstream. https://github.com/g1257/dmrgpp/issues/40 It is already fixed in the upstream git https://github.com/g1257/dmrgpp/commit/528501e4a5814d4cbb80e2cf16ea407f9e012ee6

Bug#1026864: dmrgpp: flaky autopkgtest on amd64: times out

2023-07-31 Thread PICCA Frederic-Emmanuel
and a comment about this issue https://github.com/g1257/dmrgpp/issues/38#issuecomment-1655740289

Bug#1042740: dmrgpp: Please package the new 6.04 version

2023-07-31 Thread Picca Frédéric-Emmanuel
Source: dmrgpp Version: 6.02-3 Severity: wishlist Dear Maintainer, A new version is available, could you package it -- System Information: Debian Release: trixie/sid APT prefers unstable APT policy: (500, 'unstable'), (1, 'experimental') Architecture: amd64 (x86_64) Kernel: Linux 6.4.0-1-a

Bug#1042403: pyqt6: could you package the documentation

2023-07-27 Thread Picca Frédéric-Emmanuel
Source: pyqt6 Severity: normal Dear Maintainer, I would be great if we could have the documentation available in a dedicated package. there is a sphinx_qt_documentation extension which rely on intersphinx in order to create link about PyQt5/6 API. to produce some good documentation. for now th

Bug#1040159: epics-base: embedded yajl is vulnerable to CVE-2017-16516 and CVE-2022-24795

2023-07-26 Thread PICCA Frederic-Emmanuel
Hello, I dicovered that upstream modifier yajl in order to support json5. I am wondering if their modification could not be integrated in our yajl. I fill a burg report about this idea here https://github.com/epics-base/epics-base/issues/405 Tell me what is your opinion about this. Cheers Fre

Bug#1041692: python3-mesonpy: could the build be verbose by default

2023-07-22 Thread Picca Frédéric-Emmanuel
Package: python3-mesonpy Version: 0.12.0-2 Severity: normal X-Debbugs-Cc: pi...@debian.org Dear Maintainer, I am packaging python-fabio and pyfai whcih use this new build system for python extensions. Now blhc complain that the compilation is not verbose. So I need to add something like this to

Bug#1041608: RM: python-fabio [s390x] -- ROM; not supported on big endian arch

2023-07-21 Thread Picca Frédéric-Emmanuel
Package: ftp.debian.org Severity: normal User: ftp.debian@packages.debian.org Usertags: remove X-Debbugs-Cc: python-fa...@packages.debian.org, pi...@debian.org Control: affects -1 + src:python-fabio thanks for considering Frederic

Bug#1041443: [Debian-pan-maintainers] Bug#1041443: pyfai_2023.5.0+dfsg1-3_all-buildd.changes REJECTED

2023-07-19 Thread PICCA Frederic-Emmanuel
> I am just the messenger here, if you disagree, please feel free to > contact ftpmasters or lintian maintainers. This was not a rant about this, I just wanted to understand what is going on :). > Your package has been built successfully on (some) buildds, but then the > binaries upload got rejec

Bug#1041443: [Debian-pan-maintainers] Bug#1041443: Bug#1041443: pyfai_2023.5.0+dfsg1-3_all-buildd.changes REJECTED

2023-07-19 Thread PICCA Frederic-Emmanuel
I just check this date is in the upstream tar file https://files.pythonhosted.org/packages/54/84/ea12e176489b35c4610625ce56aa2a1d91ab235b0caa71846317bfd1192f/pyfai-2023.5.0.tar.gz

Bug#1041443: [Debian-pan-maintainers] Bug#1041443: pyfai_2023.5.0+dfsg1-3_all-buildd.changes REJECTED

2023-07-19 Thread PICCA Frederic-Emmanuel
ok, it seems that I generated an orig.tag.gz with this (Thu Jan 1 00:00:00 1970). I can not remember which tool I used to generate this file. gbp import-orig --uscan or deb-new-upstream Nevertheless, why is it a serious bug ? thanks Frederic

Bug#1035717: closed by Sebastian Ramacher (unblock binoculars)

2023-05-11 Thread picca
thanks a lot

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