chain that should no longer be
used to begin with.
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GPG: 4096R/C073D2287FFB9E9B
http://psychoinformatics.de
The current 1.0.3 release no longer depends on boto and has moved to
boto3.
--
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http://psychoinformatics.de
.
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http://psychoinformatics.de
Hi,
On Sun, Aug 2, 2020, 23:47 Moritz Mühlenhoff wrote:
> On Fri, Jul 10, 2020 at 01:08:44PM +0200, Andreas Tille wrote:
> > On Mon, Jun 29, 2020 at 08:37:58PM +0200, Moritz Mühlenhoff wrote:
> > > On Fri, Aug 30, 2019 at 07:34:39AM +, Matthias Klose wrote:
> > >
> > > The upstream homepage
Hi,
On Sun, Jul 26, 2020, 13:20 Moritz Mühlenhoff wrote:
> On Fri, Jul 10, 2020 at 01:07:27PM +0200, Andreas Tille wrote:
> > Hi Moritz,
> >
> > On Tue, Jun 30, 2020 at 08:14:15PM +0200, Moritz Mühlenhoff wrote:
> > >
> > > Given that there's a separate mrtrix3 source package which is ported to
Hi,
yes, that sounds like to best course of action to me.
Best,
Michael
On Mon, Jun 29, 2020, 20:38 Moritz Mühlenhoff wrote:
> On Fri, Aug 30, 2019 at 07:34:39AM +, Matthias Klose wrote:
> > Package: src:pynifti
> > Version: 0.20100607.1-4.1
> > Severity: normal
> > Tags: sid bullseye
> >
The package is done, and in local production use for a few days now. It
is hosted on github at https://github.com/mih/debian-annexremote.git
until DPMT approves my request to join the team.
Lintian 2.80 reports no issues with it.
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http
Package: wnpp
Severity: wishlist
Owner: Michael Hanke
* Package name: annexremote
Version : 1.4.3
Upstream Author : Silvio Ankermann
* URL : https://github.com/Lykos153/AnnexRemote
* License : GPL3
Programming Lang: Python
Description : abstraction
Control: retitle -1 "ROM: pyoptical is outdated and not ported to Python3"
Control: reassign -1 ftp.debian.org
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Hey,
On Wed, Sep 25, 2019, 17:47 Sébastien Villemot wrote:
> Thanks Yaroslav and Michael for your reply.
>
> I’m going to perform the move to another team. Do you want to remain
> listed as uploaders?
>
I am OK to be removed.
Thanks,
Michael
Hi,
On Mon, Sep 23, 2019 at 2:45 PM Yaroslav Halchenko wrote:
> On Sun, 22 Sep 2019, Boyuan Yang wrote:
>
> > Sorry but there hasn't been much progress yet -- recent MATLAB releases have
> > several changes that requires much tweak on matlab-support package and I
> > haven't have enough time into
Package: wnpp
Severity: normal
Haven't used this package in a long time and the version in Debian is
two major releases behind upstream. Upstream does not use a standard
build system (but a custom configure script) that can make updates rather
time consuming.
The package has an overall low user c
Hi,
just FYI there is/was a PR on JASP's GitHub with a semi complete packaging.
It had quite a few TODOs, but they should be detailed in the PR. Maybe that
is a useful starting point.
Cheers,
Michael
On Jan 21, 2018 21:35, "Andreas Tille" wrote:
> Hi Joris,
>
> thanks for this ITP. Please
Package: wnpp
Severity: normal
I intend to orphan the arno-iptables-firewall package. Popcon is at 468.
Upstream is very pleasant and releases are infrequent. However, I still
lack the resources to take proper care of this package.
The package description is:
Unlike other lean iptables frontends
AM, Michael Hanke wrote:
> Update:
>
> I stopped the gdm3 service and started a freshly installed slim login
> manager. I comes right up, no issues.
>
> Starting the GNOME session from slim, however, results in immediate
> failure. This is syslog from the last message of
sing log file.
On Fri, Nov 3, 2017 at 5:02 PM, Michael Hanke wrote:
> Hi,
>
> same here, after upgrade to buster no X anymore. Normal start works, but
> ends at terminal login. Manual startx makes the screen flicker briefly, then
> back to terminal. X log contain no errors (EE).
&g
Hi,
same here, after upgrade to buster no X anymore. Normal start works, but
ends at terminal login. Manual startx makes the screen flicker briefly,
then back to terminal. X log contain no errors (EE).
Downgrade to stretch didn't change the situation in any way. Going back
from linux 4.13 to 4.8
Package: ftp.debian.org
Severity: normal
The package can no longer be built in unstable.
I just issues an ITP for the replacement #861327
Package: wnpp
Severity: wishlist
Owner: Michael Hanke
* Package name: fsleyes
Version : 0.10.1
Upstream Author : Paul McCarthy
* URL : https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/
* License : Apache-2
Programming Lang: Python
Description : feature-rich
Package: wnpp
Severity: wishlist
Owner: Michael Hanke
* Package name: libxdf
Version : 0.93
Upstream Author : Yida Lin (?)
* URL : https://github.com/Yida-Lin/libxdf
* License : GPL3
Programming Lang: C++
Description : static C++ library for loading
Package: sigviewer
Version: 0.5.1+svn556-5
Severity: wishlist
FTR: sigviewer switched to Qt5 and wants libxdf
(https://github.com/Yida-Lin/libxdf) now. libxdf has no upstream supoprt
for building shared libraries.
-- System Information:
Debian Release: 9.0
APT prefers testing
APT policy: (90
Source: biosig4c++
Severity: wishlist
FYI: Looking into updating sigviewer to 0.6. Noticed that an update of biosig
is a precondition.
-- System Information:
Debian Release: 9.0
APT prefers testing
APT policy: (900, 'testing'), (800, 'unstable')
Architecture: amd64 (x86_64)
Foreign Architect
that the buttons become visible again and any
functionality is available at all.
Sure thing that this isn't a general solution, but better than nothing.
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Package: python-docutils
Version: 0.12+dfsg-1
Severity: normal
Upgrading from 0.12 to 0.13.1 causes this error when processing a
list-table directive within a pelican run.
ERROR: Could not process pages/publications.rst
| TypeError: unsupported operand type(s) for +=: 'int' and 'str'
|___
|
Hi Thies,
I had a quick look at upgrading the package to 2.0.3. I am trying to
build against Qt5 (all the bdeps seem to be there), but the AC setup
does not acknowledge the presence of Qt5 in my test system.
Should this be working?
Thanks,
Michael
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ondor 8.4.10 release, expected on December 1st.
>
> Let me know if you need anything more, ...Tim
>
> On 11/04/2016 06:31 AM, Michael Hanke wrote:
> > Relaying information from upstream's triaging:
> >
> >
> >
> > I concluded that the problem wa
Package: python-rdflib-jsonld
Version: 0.4.0-1
Severity: important
The full protocol of the issue and resolution is here:
https://github.com/RDFLib/rdflib-jsonld/issues/42
In short: python-rdflib needs to be upgraded in order get correct http
requests required to obtain jsonld context from sche
Thanks Adrian!
Will upload when #828269 has been dealt with.
Michael
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Relaying information from upstream's triaging:
I concluded that the problem was not with HTCondor. It had to do with the
following packages: libglobus-gsi-proxy-core, libglobus-gsi-proxy-ssl and
voms. The Globus folks addressed the first two issues. However, the VOMS issue
(#828595)
Hey,
thanks a lot for implementing this!
It sure works for me. However, I am uncertain whether Debian Python policy
would mandate dedicated python{3}-patoolib packages. You might want to
double-check that.
I didn't do a full review, but I noticed one tiny thing:
Vcs-Git URL wrong in debian/cont
Package: wnpp
Severity: wishlist
Owner: Michael Hanke
* Package name: indexed-gzip
Version : 0.1
Upstream Author : Paul D McCarthy
* URL : https://github.com/pauldmccarthy/indexed_gzip
* License : BSDish https://opensource.org/licenses/zlib-license.php
f this specific directory depends on systemd. So if I ship
this in the package and systemd changes its behavior, this issue would
resurface.
Michael
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Source: patool
Severity: wishlist
Currently it is impossible to use patool's Python API from Python 3
applications. It would be nice to have support for Python 3. Looking at
upstream they seem to support Python 3 alright.
Thanks!
Package: psychopy
Version: 1.83.04.dfsg-2
Severity: normal
When using PsychoPy in an IPython session the following happens:
In [1]: import psychopy.iohub as iohub
In [2]: io = iohub.launchHubServer()
---
o resolve in the scope
of this package with a rename.
If you have time to keep working on the package, please do not hesitate to add
yourself as an uploader. I'll do my best to review updates, if you are
interested.
Thanks again,
Michael
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Hi,
On Sat, Mar 19, 2016 at 01:38:51PM +0100, Julien Cristau wrote:
> On Tue, Mar 15, 2016 at 15:34:18 +0100, Michael Hanke wrote:
> > If this package is responsible, the most recent upgrade in my system
> > happened on 2016-03-11, upgrading from 2.99.917-2 to
> > 2
This is likely a duplicate of https://bugs.debian.org/817195
Likely duplicate: https://bugs.debian.org/818384
Hi,
I seem to observe the exact same behavior on a machine with a different
chipset
00:02.0 VGA compatible controller: Intel Corporation 3rd Gen Core processor
Graphics Controller (rev 09)
and using a Display Port connection. Gnome shell in use also. It doesn't
depend on the particular DP devic
Forgot one thing. Here is the new set of dependency for the experimental
upload of ODIN 2.0
libdcmtk-dev | libdcmtk2-dev | libdcmtk1-dev,
libdcmtk2v5,
dcmtk
I was able to get a successful build with it. Any advice on how to
optimze that (apart from ignoring the past) is appreciated.
Thanks,
Mic
This dependency setting is motivated by the need for 'dicom.dic' which
has moved a lot in the past. Currently
% apt-file search dicom.dic
libdcmtk2: /usr/share/libdcmtk2/dicom.dic
libdcmtk2v5: /usr/share/libdcmtk2/dicom.dic
libdcmtk4v5: /usr/share/libdcmtk4/dicom.dic
libdcmtk5: /usr/share/libdcmtk
ion have
> started and you'll need another sourceful upload.)
>
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FTR: I was able to build the latest upstream release (2.0.0) against the
QWT package (6.1) in experimental. However, a linking problem (get's
linked against Qt4 and Qt5) causes the main GUI to segfault. I contacted
upstream to get this solved. Will upload to experimental once this is
done.
FTR: The test fails, because the dtype of the metadata array in the test
file changes during the read/write cycle in the test. The actual content
is unchanges though.
After initial write:
array([['dt', '0.1'],
['first_id', '0'],
['first_index', '0'],
['label', 'population0'],
FTR: libqwt-qt5-dev is now available in experimental -- a 2.0.0 puload
to experimental seems possible.
Hi,
thanks for the patch. I tried to prepare a new upstream version (2.0.0) for
upload, but it is deadlocked (like other packages) in the impossible
transition to VTK6+Qt5 without a version of QWT for Qt5 being available.
So instead of an upstream update, the next upload will be a patched
1.8.8.
Package: wnpp
Severity: wishlist
Owner: Michael Hanke
* Package name: dcmstack
Version : 0.6.2
Upstream Author : Brendan Moloney
* URL : https://github.com/moloney/dcmstack
* License : MIT
Programming Lang: Python
Description : DICOM to Nifti
Hi,
I looked into converting fslview to Qt5, but that doesn't seem to be an
option. QWT is a build-dependency, but the latest version 6 is not yet
available for Qt5. That seems to be a blocker right now.
Michael
home/mih/debian/fsl/fslview/obj-x86_64-linux-gnu/src/fslview/moc_application.cxx:22:5:
error: ‘QByteArrayData’ does not name a type
QByteArrayData data[37];
Michael
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Hi,
thanks for the report and sorry for the delay. I can reproduce it,
as soon as I install bwidget -- which is not a dependency of FSL.
I'll look into it.
Michael
field is empty.
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Package: wnpp
Severity: wishlist
Owner: Michael Hanke
* Package name: nilearn
Version : 0.1.3
Upstream Author : Gael Varoquaux
* URL : https://github.com/nilearn/nilearn
* License : BSD
Programming Lang: Python
Description : fast and easy statistical
Hi,
thanks for the report.
On Sat, Dec 06, 2014 at 01:17:17PM +0100, Raphael Geissert wrote:
> > possible bashism in ./etc/init.d/condor line 167 (unsafe echo with
> > backslash):
> > echo "$@""\c"
This is located in a code block that is only executed when "echo -n"
doesn't work. This should
The kfreebsd failure is not the only issue with the suboptimal detection
of environments based on OS names in Condor's cmake setup. #780517 is
another example.
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> file to identify what family the distro comes from. I have no clue how to
> implement that in cmake though.
>
> http://debdiffs.raspbian.org/main/c/condor/condor_8.2.3~dfsg.1-5%2brpi1.debdiff
Thanks for the patch. I will include your fix in the upload of HTCondor
8.2.8, but I agree tha
Hi,
On May 14, 2015 00:45, "peter green" wrote:
>
> Tags 784778 +patch
> thanks
>
>> During a binNMU of condor for the gsoap transition, the following error
was
>> encountered on all architectures:
>>
>> /«PKGBUILDDIR»/src/condor_schedd.V6/soap_scheddStub.cpp: In function
'bool stub_prefix(const
or daemon sent email
+notifications (CVE-2014-8126). (Closes: #775276)
+
+ -- Michael Hanke Fri, 16 Jan 2015 18:59:12 +0100
+
condor (8.2.3~dfsg.1-5) unstable; urgency=medium
* Fix wrong default SPOOL location introduced with 8.2.3~dfsg.1-4. Whenever
diff -Nru condor-8.2.3~dfsg.1/debian/patches/CVE-20
Hi Gert,
On Fri, Jan 16, 2015 at 10:39 AM, Michael Hanke
wrote:
> I am currently building the package, and if that shows no problems, I will
> upload after a bit of testing. Few more things:
>
> - I'd target "experimental" not unstable (solely for not causing problem
self as an uploader, so I can simply
sponsor the upload.
Thanks again for all your effort!
Michael
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Hi Gert,
On Jan 14, 2015 5:08 PM, "Gert Wollny" wrote:
>
> Hello all,
>
> now that Paul provided an official upstream tarball I took the liberty
> to update the itksnap package to version 3.2.0 in the packaging git on
> alioth. There is still a lintian warning about
>
> menu-icon-uses-relativ
resolved by VTK6. I hope that mixing Qt versions is a more fundamental
problem, as switching to Qt5 seems infeasible at this point. Qwt
(another dependencies) also depends on Qt4 in its latest version in
Debian.
Michael
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I just noticed that if I start baobab with sudo, I can see those
partitions which are mounted in /media or have mountoption user in fstab.
Further investigation showed up that this even works if I start baobab
with sudo -u where is the same as logged in, so it is
obvious that it has to do so
Package: baobab
Version: 3.14.1-1
Severity: important
Starting baobab without parameters shows up only root-filesystem, unmounted
drives and my personal folder.
If I walk to the mountpoints (/home and some are subfolders of /mnt) within
baobab there seems to be nothing mounted, what maybe wanted,
Package: nautilus
Version: 3.14.1-2
Severity: normal
There is no "open with" menu entry if right-clicking on directories.
-- System Information:
Debian Release: 8.0
APT prefers testing-updates
APT policy: (500, 'testing-updates'), (500, 'testing')
Architecture: amd64 (x86_64)
Kernel: Linux
On Fri, Dec 5, 2014 at 11:12 PM, Adam D. Barratt
wrote:
> On Fri, 2014-12-05 at 22:56 +0100, Michael Hanke wrote:
> > The mixture of in-place modification at runtime and patches has proven
> > to be unreliable. Hence to move towards putting as much
> > as possible into pa
Hi Adam,
thanks for taking processing my request:
On Fri, Dec 5, 2014 at 10:42 PM, Adam D. Barratt
wrote:
> Control: tags -1 + moreinfo
>
> On Fri, 2014-12-05 at 21:57 +0100, Michael Hanke wrote:
> > The previously unblocked (#771419) version 8.2.3~dfsg.1-4 that was
> > in
. This update reverts this unintentional
+change and sets SPOOL explicitly to /var/spool/condor again.
+(Closes: #772170)
+
+ -- Michael Hanke Fri, 05 Dec 2014 20:32:17 +0100
+
condor (8.2.3~dfsg.1-4) unstable; urgency=medium
* Adjust mechanism to apply the default Debian
Here is a tentative patch.
diff --git a/debian/patches/default_debian_config b/debian/patches/default_debian_config
index 77ba593..9415fd3 100644
--- a/debian/patches/default_debian_config
+++ b/debian/patches/default_debian_config
@@ -90,3 +90,32 @@ Author: Michael Hanke
type=path
review
Package: htcondor
Version: 8.2.3~dfsg.1-4
Severity: grave
Justification: causes non-serious data loss
With the update to 8.2.3~dfsg.1-4 the default condor config file included
a modified location for the SPOOL directory.
As a result the spool directory is now by default located at
/var/lib/condor/
.
+ (Closes: #766067)
+
+ -- Michael Hanke Sat, 29 Nov 2014 09:57:27 +0100
+
condor (8.2.3~dfsg.1-3) unstable; urgency=medium
* Modify the DMTCP shim script to work with the 2.x series of DMTCP.
@@ -98,7 +114,7 @@
script.
* Bumped Standards-version to 3.9.4; no changes necessary.
Thanks for the report. I am CC'ing the Debian release team to get
feedback regarding an acceptable fix Debian testing.
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=769100
This bug is caused by the (now invalid) assumption of the Debian packaging to
find all relevant config variables in the
Hi,
On Thu, Oct 23, 2014 at 11:57:19AM -0400, Paul Yushkevich wrote:
> Hi Michael,
>
> I am confused :)
>
> You previously mentioned that the file
> /usr/lib/x86_64-linux-gnu/cmake/Qt5/Qt5Config.cmake
> exists on the system
>
> I was suggesting to set the prefix path to /usr/lib/x86_64-linux-gn
assumes a rigidity of a Qt5 installation that
does not match the actual installation of the Debian (Ubuntu, Mint,...) system
Qt5.
Michael
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5
and a bunch of other variants, but the problem persists.
Michael
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Hi,
On Tue, Oct 21, 2014 at 08:42:50AM -0400, Paul Yushkevich wrote:
> That's great to hear! As far as the CMAKE_PREFIX_PATH, I set it to
> /opt/Qt/5.3/gcc_64/lib/cmake. In my case, Qt is installed to /opt/Qt. I am
> not quite sure why the VTK and GDCM are becoming an issue in the debian
> build,
Package: dmtcp
Version: 2.3.1-5
Severity: normal
The package installs some of its docs in a versioned directory. The rest
of the package doesn't support co-installation of multiple versions,
hence it would make sense to drop the versioned path and install into
the standard directory exclusively.
Package: dmtcp
Version: 2.3.1-5
Severity: normal
Tags: upstream
According to the docs the --join option of dmtcp_checkpoint offers a way
to join an existing coordinator session and properly fail if that is not
possible. However that option seems broken:
m@meiner /tmp % dmtcp_coordinator --port 0
s intended to do.
But for the next round we either need to find a better home, or we
should let it go.
Cheers,
Michael
[1] https://groups.google.com/forum/#!topic/itksnap-users/2byPxMTS3Wo
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Hi,
On Sun, Sep 28, 2014 at 09:11:42PM -0400, Michael Gilbert wrote:
> On Sun, Sep 28, 2014 at 9:05 PM, Yaroslav Halchenko wrote:
> > On Sun, 28 Sep 2014, Michael Gilbert wrote:
> >> Hi, I've uploaded an nmu to delayed/10 remove the libxp dependency.
> >> matlab versions have not required this for
there are plans to
fix this soon, or whether I should rip out the CUDA bits.
Thanks,
Michael
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Source: fsl
Severity: normal
This current version in Debian is ancient. An update to the 5.0 series
is necessary. The first upload attempt ended in NEW due to some
documentation bits with unclear origin. Next one is coming...
-- System Information:
Debian Release: jessie/sid
APT prefers testing
n", perhaps you mean:
> ...: abstraction
Thanks! This will be fixed with the next upload.
Michael
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ck and apply it,
> please?
>
> --
> Regards,
>
> Hideki Yamane henrich @ debian.or.jp/org
> http://wiki.debian.org/HidekiYamane
>
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Hi,
On Thu, Apr 10, 2014 at 03:10:54PM +0200, Petter Reinholdtsen wrote:
> Are you still able to reproduce this? I'm trying to write a test case
> to trigger this bug, but am unable to do so. This is the test code I
> use, and it always report SigIgn: for both test
> scripts. W
Thanks for your work. I am currently traveling. Please go ahead with your
upload. I'll try to do it myself around the end of the week if you did not
manage it by then.
cheers,
michael
On Feb 9, 2014 10:45 PM, "Andreas Moog" wrote:
> tags 662542 patch
> tags 720821 patch
> thanks
>
> Dear main
${shlibs:Depends}, ${misc:Depends}, mozilla-firefox | www-browser,
> tcsh | c-shell, tk, tcl, bc, dc
> Recommends: fsl-doc-4.1 (= ${source:Version}), fsl-atlases, fslview
> Suggests: fsl-feeds, octave | ${octave:Depends}, dicomnifti,
> fsl-possum-data, fsl-first-data, gridengine-client
> Conflicts: fsl-fslview, fsl-doc-4.1 (<< 4.1.9-5~)
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Package: python-scipy
Version: 0.10.1+dfsg2-1
Severity: normal
Tags: upstream patch
The filtfilt() function in the signal module is not working in wheezy due to a
missing axis keyword argument.
Here is the upstream bug:
https://github.com/scipy/scipy/issues/2145
Here is the fix:
https://github
Package: python-nipype
Version: 0.9-1
Severity: normal
Tags: upstream patch
Hey,
the DataFinder interface is broken in this version.
See https://github.com/nipy/nipype/pull/761 for a demo and the patch.
Do you want me to upload a patched package, or do you prefer to wait for
an upstream merge a
Quick update:
After a long time the 8.x packaging is almost done. The only thing left
to do is to figure out the reason for a schedd segfault. Once this is
fixed I will upload.
Michael
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; if this will disrupt your planned work.
A quick NMU would be appreciated -- no need for a delayed-queue upload.
If I can do it myself within the next few days, I'll let you know
upfront so we do not duplicate work.
Thanks,
Michael
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Hi Paul,
thanks for bringing this to my intention. The maintainership was not
transferred by accident, instead the goal had been to have one of the
upstream developers take over the Debian packaging. However, that
process has stalled.
At this time, there is no point in keeping the package in Debi
Package: ftp.debian.org
Severity: normal
Please remove this package. It is holding up the lesstif transition. It
was originally introduced as a dependency of lipsia, which has been
removed from Debian in the past.
A very similar library is provided by the mia package that is been
worked on by the
load of condor 8.x.
Cheers,
Michael
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Michael Hanke
http://mih.voxindeserto.de
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On Sun, Dec 01, 2013 at 07:27:33PM +0100, Michael Hanke wrote:
> On Fri, Nov 29, 2013 at 08:38:26PM -0500, Yaroslav Halchenko wrote:
> > have you asked PsychoPy guys themselves?
>
> Not yet.
My post is here:
https://groups.google.com/d/topic/psychopy-users/geU_mvLJ1ms/discussio
see no significant CPU usage on an i7-3667U CPU @ 2.00GHz.
Most of the tests happened on machines with INTEL hardware, but on
NVIDIA hardware I see the same issue.
Michael
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with a s
13.04 -- all with the same
performance pattern.
> have you asked PsychoPy guys themselves?
Not yet.
Michael
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Package: psychopy
Version: 1.77.02.dfsg-1
Severity: normal
Hi,
using movie stimuli in Psychopy doesn't really work smoothly. Whenever a
movie with sound is played I experience dropped frames. I am attaching a
little benchmark that can be used to show this (done in the builder,
just select a movie
d say ardesia in its current upstream shape is not fit for a release.
I tried both the upstream .debs for 1.1 and 1.0, as well as the official
Debian package -- same behavior.
Michael
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Michael Hanke
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w
Package: ardesia
Version: 1.1-1
Severity: important
Hi,
Running ardesia yields a uniform gray screen with the mouse pointer
changes to the "edit pen". Other than that I can perform any action.
Stopping ardesia in this state only works by Ctrl-C in a terminal, upon
which ardesia segfaults.
This i
Hi Paul,
On Sun, Sep 22, 2013 at 10:47 AM, Paul Gevers wrote:
> On 22-09-13 09:36, Michael Hanke wrote:
> > thanks for the pointer! Unfortunately that did not solve the original
> issue:
>
> So far, you didn't explain the original issue :).
>
thanks again for your
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