[R-pkg-devel] winOS devel failure "knitr not available" on resubmit
I have recently resubmitted a package after fixing an issue with the license. The package passed all the checks a few days prior and on this resubmit the winOS failed with a message that I am not sure how to resolve. * checking package dependencies ... ERROR Package suggested but not available for checking: 'knitr'VignetteBuilder package required for checking but not installed: 'knitr' https://win-builder.r-project.org/incoming_pretest/ripe_0.1.0_20191130_120421/Windows/00check.log The DESCRIPTION file seems to contain the correct Imports and Suggests that have not raised issues up until this point on checks.Depends: R (>= 3.5.0) Imports: magrittrSuggests: testthat, knitr, rmarkdown, purrr, parallel, dplyr, covr VignetteBuilder: knitr Thank you Yoni [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] winOS devel failure "knitr not available" on resubmit
Thank you for the advice. I resubmitted to win-devel 20 minutes ago (0840 EST) and that error seems to be persisting. https://win-builder.r-project.org/Htqi1hmm4O20/00check.log here is the link to the full DESCRIPTION file https://raw.githubusercontent.com/yonicd/ripe/master/DESCRIPTION That is the same system that CRAN checks for winOS will use? Thank you On Sat, Nov 30, 2019 at 8:29 AM Duncan Murdoch wrote: > On 30/11/2019 7:02 a.m., Yoni wrote: > > I have recently resubmitted a package after fixing an issue with the > > license. The package passed all the checks a few days prior and on this > > resubmit the winOS failed with a message that I am not sure how to > resolve. > > > > * checking package dependencies ... ERROR > > Package suggested but not available for checking: > > 'knitr'VignetteBuilder package required for checking but not > > installed: 'knitr' > > > > > https://win-builder.r-project.org/incoming_pretest/ripe_0.1.0_20191130_120421/Windows/00check.log > > > > The DESCRIPTION file seems to contain the correct Imports and Suggests > > that have not raised issues up until this point on checks.Depends: R > > (>= 3.5.0) > > > > Imports: magrittrSuggests: > > testthat, > > knitr, > > rmarkdown, > > purrr, > > parallel, > > dplyr, > > covr > > VignetteBuilder: knitr > > > > Assuming the joined lines "Imports: magrittrSuggests:" are just in your > email, not in the DESCRIPTION file (you used HTML, which generally gets > mangled here), that's likely a transient error on the test system. I > would resubmit. > > Duncan Murdoch > -- Yoni You do not learn to swim from books and lectures on the theory of buoyancy (Box 1990) [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
[R-pkg-devel] roxygen2 7.0.1 backslash escape error
I received a message from CRAN yesterday stating my package is erroring on all the systems all of a sudden. https://cran.r-project.org/web/checks/check_results_texPreview.html After some investigation the root of the errors looks like it came from the new release of roxygen2 (7.0.1). https://github.com/r-lib/roxygen2/issues/990 Is there anything I can do in the interim to fix this problem since I do not know when this apparent bug fix will be pushed to CRAN, relieving my errors in the documentation builds, which could be beyond the warning period (2019-12-13), which the package will be removed from CRAN. Thank you [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] roxygen2 7.0.1 backslash escape error
Thank you for the advice. I think that (a) is a problem to implement since the new roxygen2 is on the CRAN systems and I can not control which version they are using to build the package in the checks. I have gone with option (c), which is unfortunate since I will need to change my examples twice to accommodate a problem that another package, that has such a high degree of reverse dependency, has created. On Sat, Nov 30, 2019 at 9:42 AM Hugh Parsonage wrote: > You could (a) install the updated roxygen from github and rebuild the man/ > files ; (b) manually edit the Rd files without using roxygen ; or (c) > remove the examples until you can apply the fix. > > On Sun, 1 Dec 2019 at 1:26 am, Yoni wrote: > >> I received a message from CRAN yesterday stating my package is erroring on >> all the systems all of a sudden. >> >> https://cran.r-project.org/web/checks/check_results_texPreview.html >> >> After some investigation the root of the errors looks like it came from >> the >> new release of roxygen2 (7.0.1). >> >> https://github.com/r-lib/roxygen2/issues/990 >> >> Is there anything I can do in the interim to fix this problem since I do >> not know when this apparent bug fix will be pushed to CRAN, relieving my >> errors in the documentation builds, which could be beyond the warning >> period (2019-12-13), which the package will be removed from CRAN. >> >> Thank you >> >> [[alternative HTML version deleted]] >> >> __ >> R-package-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-package-devel >> > -- Yoni You do not learn to swim from books and lectures on the theory of buoyancy (Box 1990) [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] roxygen2 7.0.1 backslash escape error
Thank you for the clarification. I am then more confused. The CRAN version of the package (texPreview) has been unchanged since Oct 23, at which point it was passing the checks with no errors. Here is the CRAN mirror on GitHub with the example that is now erroring. https://github.com/cran/texPreview/blob/master/R/kable.R The examples section seems to have valid R code in them. Last week (after roxygen2 was updated on CRAN to 7.0.1) the same documentation is throwing errors. Here is the CRAN checks link: https://cran.r-project.org/web/checks/check_results_texPreview.html Has the method of checking documentation changed in the past week that would cause these previously working examples to start to fail? Thank you for the help On Sat, Nov 30, 2019 at 10:09 AM Duncan Murdoch wrote: > On 30/11/2019 9:59 a.m., Yoni wrote: > > Thank you for the advice. > > > > I think that (a) is a problem to implement since the new roxygen2 is on > the > > CRAN systems and I can not control which version they are using to build > > the package in the checks. > > I don't think CRAN runs roxygen2 at all. It tests based on the > description of documentation in Writing R Extensions. > > Duncan Murdoch > > > > > I have gone with option (c), which is unfortunate since I will need to > > change my examples twice to accommodate a problem that another package, > > that has such a high degree of reverse dependency, has created. > > > > > > On Sat, Nov 30, 2019 at 9:42 AM Hugh Parsonage > > > wrote: > > > >> You could (a) install the updated roxygen from github and rebuild the > man/ > >> files ; (b) manually edit the Rd files without using roxygen ; or (c) > >> remove the examples until you can apply the fix. > >> > >> On Sun, 1 Dec 2019 at 1:26 am, Yoni wrote: > >> > >>> I received a message from CRAN yesterday stating my package is > erroring on > >>> all the systems all of a sudden. > >>> > >>> https://cran.r-project.org/web/checks/check_results_texPreview.html > >>> > >>> After some investigation the root of the errors looks like it came from > >>> the > >>> new release of roxygen2 (7.0.1). > >>> > >>> https://github.com/r-lib/roxygen2/issues/990 > >>> > >>> Is there anything I can do in the interim to fix this problem since I > do > >>> not know when this apparent bug fix will be pushed to CRAN, relieving > my > >>> errors in the documentation builds, which could be beyond the warning > >>> period (2019-12-13), which the package will be removed from CRAN. > >>> > >>> Thank you > >>> > >>> [[alternative HTML version deleted]] > >>> > >>> __ > >>> R-package-devel@r-project.org mailing list > >>> https://stat.ethz.ch/mailman/listinfo/r-package-devel > >>> > >> > > > > -- Yoni You do not learn to swim from books and lectures on the theory of buoyancy (Box 1990) [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] roxygen2 7.0.1 backslash escape error
Thank you for the clarification regarding roxygen2, it does look like a confounding issue. I will try to resolve the paths in the tex. Thank you for the help. On Sat, Nov 30, 2019 at 11:39 AM Iñaki Ucar wrote: > > > El sáb., 30 nov. 2019 16:22, Yoni escribió: > >> Thank you for the clarification. >> >> I am then more confused. >> >> The CRAN version of the package (texPreview) has been unchanged since Oct >> 23, at which point it was passing the checks with no errors. >> > > If your package is sitting on CRAN since then, and in fact I see in your > DESCRIPTION that you generated the docs with roxygen2 6.1.1, then the > roxygen2 update has nothing to do with your check error. You run roxygen2; > CRAN doesn't. > > Iñaki > -- Yoni You do not learn to swim from books and lectures on the theory of buoyancy (Box 1990) [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] roxygen2 7.0.1 backslash escape error
Where can I find the current tex compiler / pandocs setup on CRAN check systems so I can adjust my CI, to replicate the failure? On Sat, Nov 30, 2019 at 11:45 AM Yoni wrote: > Thank you for the clarification regarding roxygen2, it does look like a > confounding issue. > > I will try to resolve the paths in the tex. > > Thank you for the help. > > On Sat, Nov 30, 2019 at 11:39 AM Iñaki Ucar > wrote: > >> >> >> El sáb., 30 nov. 2019 16:22, Yoni escribió: >> >>> Thank you for the clarification. >>> >>> I am then more confused. >>> >>> The CRAN version of the package (texPreview) has been unchanged since Oct >>> 23, at which point it was passing the checks with no errors. >>> >> >> If your package is sitting on CRAN since then, and in fact I see in your >> DESCRIPTION that you generated the docs with roxygen2 6.1.1, then the >> roxygen2 update has nothing to do with your check error. You run roxygen2; >> CRAN doesn't. >> >> Iñaki >> > > > -- > Yoni > > You do not learn to swim from books and lectures on the theory of buoyancy > (Box 1990) > -- Yoni You do not learn to swim from books and lectures on the theory of buoyancy (Box 1990) [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
