HI, Dear Greg,
I have one question about the variable relative influence plot: THE
following is the rel.inf value of 25 variables, but wen I plot, not all the
variables are labeled.
i.e. num_genes, wg, hydrophob_per etc are not labeled on the y-axis. also
the variables are labeled vertically, can it be labeled horizontally just
like the summary table?
Thanks!
> summary(gbm1, n.trees=best.iter, plotit=TRUE, order=TRUE, cBars=14) #
based on the estimated best number of trees
var rel.inf
1 NE 26.59040034
2 num_genes 20.81996803
3 NW 13.92791855
4 WG 11.69661160
5 WD 7.55712791
6 hydrophob_per 6.02749793
7 WC 5.05468091
8 DY 3.85165129
9 charge_per 1.96136736
10 polar_per 0.76594775
11 num_cell 0.53248597
12 DP 0.48179106
13 acid_per 0.45071580
14 TA 0.15821798
15 WW 0.05460215
16 FC 0.04913720
17 QT 0.01987817
18 CT 0.00000000
19 SK 0.00000000
20 YG 0.00000000
21 position 0.00000000
22 freq_hypo 0.00000000
23 freq_intra 0.00000000
24 log_hypo 0.00000000
25 base_per 0.00000000
--
Sincerely,
Changbin
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