supply result of sessionInfo() -- undoubtedly you have outdated packages
installed. to work with the current image and get efficient support from
this
list, use R 2.9 and install packages using biocLite. do not cross-post to
r-help.
On Wed, May 6, 2009 at 12:53 PM, Barbara Cegielska <bar...@ibch.poznan.pl>wrote:
> I would like to load ApoAI.RData. During the operation of reading this data
> an error occurs. There is also a problem with STF file.
>
> > library (limma)
> > load("ApoAI.RData")
> Warning message:
> 'RG' looks like a pre-2.4.0 S4 object: please recreate it
> > objects()
> [1] "RG"
> > names(RG)
> [1] "R" "G" "Rb" "Gb" "printer" "genes" "targets"
> > RG$targets
> FileName Cy3 Cy5
> c1 a1koc1.spot Pool C57BL/6
> c2 a1koc2.spot Pool C57BL/6
> c3 a1koc3.spot Pool C57BL/6
> c4 a1koc4.spot Pool C57BL/6
> c5 a1koc5.spot Pool C57BL/6
> c6 a1koc6.spot Pool C57BL/6
> c7 a1koc7.spot Pool C57BL/6
> c8 a1koc8.spot Pool C57BL/6
> k1 a1kok1.spot Pool ApoAI-/-
> k2 a1kok2.spot Pool ApoAI-/-
> k3 a1kok3.spot Pool ApoAI-/-
> k4 a1kok4.spot Pool ApoAI-/-
> k5 a1kok5.spot Pool ApoAI-/-
> k6 a1kok6.spot Pool ApoAI-/-
> k7 a1kok7.spot Pool ApoAI-/-
> k8 a1kok8.spot Pool ApoAI-/-
> > spottypes=readSpotTypes("ApoAISpotTypes.txt")
> > spottypes
> SpotType ID Name Color
> 1 cDNA * * black
> 2 BLANK BLANK * brown
> 3 Blank Blank * orange
> 4 Control Control * blue
> > RG$genes$Status=controlStatus(spottypes, RG)
> Matching patterns for: Error in matrix(unlist(value, recursive = FALSE,
> use.names = FALSE), nrow = nr, :
> attempt to set an attribute on NULL
>
> Thank you for your help.
>
> Regars,
> B.
>
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>
--
Vincent Carey, PhD
Biostatistics, Channing Lab
617 525 2265
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