Dear Selena, You probably will want to try to run this in a computing cluster, parallelizing over samples.
Best, R. On Tue, Apr 21, 2009 at 5:40 PM, Selena Niu <yue....@yale.edu> wrote: > > Hi All: > > Has anyone analyzed Illumina 550K data using DNAcopy package? I have around > 2300 samples. According to > Venkatraman and Olshen 2007 paper, it needs about 25 min to run a single > sample for Affymetrix 100K. I am afraid it will take too long to analyzed my > data. Anybody has an idea? Thanks! > > Best, > -- > View this message in context: > http://www.nabble.com/DNAcopy-package-in-R-tp23158907p23158907.html > Sent from the R help mailing list archive at Nabble.com. > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > -- Ramon Diaz-Uriarte Statistical Computing Team Structural Biology and Biocomputing Programme Spanish National Cancer Centre (CNIO) http://ligarto.org/rdiaz Phone: +34-91-732-8000 ext. 3019 ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
