I have this data:
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE162562&fbclid=IwAR0iZQhttG8HzGhFIIMWbFgNszQrVDgiyVChYzQ_ypCx_d-1pn_tm7STjGs
and I want to compare:
healthy vs Mild healthy vs Highly exposed seronegative (ishgl) Healthy vs
Asymptomatic covid19 patient healthy vs Highly exposed seronegative (non
ishgl) from this data.
I started like :
gset <- getGEO("GSE162562", GSEMatrix =TRUE, getGPL=FALSE)
gset
sampleinfo = pData(gset[[1]])[, 1:3]
print(sampleinfo)
but i need help to proceed futher
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