This query should almost certainly be posted on the Bioconductor Help site rather than here. Especially so as it is a general question about a genomics "workflow" rather than a question about R programming.
Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Thu, Jul 18, 2019 at 12:55 PM Spencer Brackett < spbracket...@saintjosephhs.com> wrote: > Good evening, > > I am dealing with an already analyzed .RData file consisting of > pre-configured data objects loaded into my environment. I am attempting to > take this data, which shows an overall correlation of survival with > methylation pattern for a form of brain cancer, and go to the individual > probe sets and see if MGMT is one of the genes whose methylation show an > association with survival. To do this I am under the impression that I have > to visualize the probesets in order to view them/determine what gene or > genes (unbiasedly) show an association between meth. and survival. I have > been trying to run a few different methods such as microarray probe set > mapping through Ensembl, but without avail. > Would anyone perhaps know of a procedure/workflow that I could use to > achieve this? > > Best, > > Spencer > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
