Good evening,
I am dealing with an already analyzed .RData file consisting of
pre-configured data objects loaded into my environment. I am attempting to
take this data, which shows an overall correlation of survival with
methylation pattern for a form of brain cancer, and go to the individual
probe sets and see if MGMT is one of the genes whose methylation show an
association with survival. To do this I am under the impression that I have
to visualize the probesets in order to view them/determine what gene or
genes (unbiasedly) show an association between meth. and survival. I have
been trying to run a few different methods such as microarray probe set
mapping through Ensembl, but without avail.
Would anyone perhaps know of a procedure/workflow that I could use to
achieve this?
Best,
Spencer
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