Hi everyone, I am trying to install the contra package on my Ubuntu server.
Ich bekomme aber die folgende Fehlermeldung: But I keep getting this error: Installing contfrac '/usr/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet \ CMD INSTALL '/tmp/Rtmp0ZStmN/devtools84a45d407429/contfrac' \ --library='/home/yeroslaviz/R/x86_64-pc-linux-gnu-library/3.3' \ --install-tests * installing *source* package ‘contfrac’ ... ** package ‘contfrac’ successfully unpacked and MD5 sums checked ** libs gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c contfrac.c -o contfrac.o gcc: error: unrecognized command line option ‘-fstack-protector-strong’ gcc: error: unrecognized command line option ‘-Wdate-time’ /usr/lib/R/etc/Makeconf:132: recipe for target 'contfrac.o' failed make: *** [contfrac.o] Error 1 ERROR: compilation failed for package ‘contfrac’ * removing ‘/home/yeroslaviz/R/x86_64-pc-linux-gnu-library/3.3/contfrac’ Error: Command failed (1) is this a known problem? my server has the following gcc version installed- 5.4.0. BUT when typing which gcc I get the following path - /home/yeroslaviz/anaconda_ete/bin/gcc the version of this gcc is though - 4.8.5. the gcc version of /usr/bin/gcc -v is Using built-in specs. COLLECT_GCC=/usr/bin/gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.4' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.4) I will appreciate any help. danke Assa > sessionInfo() R version 3.3.2 (2016-10-31) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 16.04.1 LTS locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_3.3.2 tcltk_3.3.2 —— Assa Yeroslaviz, PhD Application service, Bioinformatics group Max Planck Institute for Biochemistry Am Klopferspitz 18, 82152 Martinsried Germany Tel: +49 89 8578 2427 Email: yerosla...@biochem.mpg.de<mailto:yerosla...@biochem.mpg.de> [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
