Just FYI: This one slipped through CRAN checks. We are in contact with
the maintainer.
Best,
Uwe Ligges
On 11.12.2015 22:11, Marc Schwartz wrote:
On Dec 11, 2015, at 2:40 PM, Duncan Murdoch <murdoch.dun...@gmail.com> wrote:
On 11/12/2015 2:36 PM, William Dunlap wrote:
stats::sigma was added to R recently. It is is R-devel now, I don't know
about yesterday's R-3.2.3.
As Rich saw, it's not. pbkrtest should have "Depends: R (>= 3.3.0)" instead of
"Depends: R (>= 3.0.0)" in its DESCRIPTION.
You can see it failed tests on CRAN.
Duncan Murdoch
Just to confirm, having installed 3.2.3 this morning, stats::sigma is not
present.
FWIW, it may, in some fashion, be related to the dependency of pbkrtest on lme4.
The ?sigma for lme4 shows the following in Examples:
methods(sigma)# from R 3.3.0 on, shows methods from pkgs 'stats' *and* 'lme4'
So there may be a package namespace/export issue at play here...
Regards,
Marc Schwartz
Bill Dunlap
TIBCO Software
wdunlap tibco.com
On Fri, Dec 11, 2015 at 11:05 AM, Duncan Murdoch
<murdoch.dun...@gmail.com> wrote:
On 11/12/2015 1:44 PM, Rich Shepard wrote:
Trying to update package pbkrtest failed because of a missing object
in
another namespace. Not having experienced this issue before now I don't
know
what to do to fix the problem. Here's the story:
* installing *source* package ‘pbkrtest’ ...
** package ‘pbkrtest’ successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import by ‘stats::sigma’ when loading
‘pbkrtest’
Error : object ‘sigma’ is not exported by 'namespace:stats'
ERROR: lazy loading failed for package ‘pbkrtest’
* removing ‘/usr/lib/R/library/pbkrtest’
* restoring previous ‘/usr/lib/R/library/pbkrtest’
The downloaded source packages are in
‘/tmp/RtmppHtiuJ/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages(update[instlib == l, "Package"], l, contriburl =
contriburl, :
installation of package ‘pbkrtest’ had non-zero exit status
Advice needed.
I don't see that. You need to give more details: I'd start with
sessionInfo(), and the version number of the pbkrtest package that you're
trying to install. (If R is downloading it for you,
available.packages()["pbkrtest",] will give lots of useful information.)
Duncan Murdoch
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______________________________________________
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and provide commented, minimal, self-contained, reproducible code.
______________________________________________
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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