> On Dec 11, 2015, at 2:40 PM, Duncan Murdoch <murdoch.dun...@gmail.com> wrote: > > On 11/12/2015 2:36 PM, William Dunlap wrote: >> stats::sigma was added to R recently. It is is R-devel now, I don't know >> about yesterday's R-3.2.3. > > As Rich saw, it's not. pbkrtest should have "Depends: R (>= 3.3.0)" instead > of "Depends: R (>= 3.0.0)" in its DESCRIPTION. > You can see it failed tests on CRAN. > > Duncan Murdoch
Just to confirm, having installed 3.2.3 this morning, stats::sigma is not present. FWIW, it may, in some fashion, be related to the dependency of pbkrtest on lme4. The ?sigma for lme4 shows the following in Examples: methods(sigma)# from R 3.3.0 on, shows methods from pkgs 'stats' *and* 'lme4' So there may be a package namespace/export issue at play here... Regards, Marc Schwartz >> Bill Dunlap >> TIBCO Software >> wdunlap tibco.com >> >> >> On Fri, Dec 11, 2015 at 11:05 AM, Duncan Murdoch >> <murdoch.dun...@gmail.com> wrote: >> > On 11/12/2015 1:44 PM, Rich Shepard wrote: >> >> >> >> Trying to update package pbkrtest failed because of a missing object >> >> in >> >> another namespace. Not having experienced this issue before now I don't >> >> know >> >> what to do to fix the problem. Here's the story: >> >> >> >> * installing *source* package ‘pbkrtest’ ... >> >> ** package ‘pbkrtest’ successfully unpacked and MD5 sums checked >> >> ** R >> >> ** data >> >> ** inst >> >> ** preparing package for lazy loading >> >> Warning: replacing previous import by ‘stats::sigma’ when loading >> >> ‘pbkrtest’ >> >> Error : object ‘sigma’ is not exported by 'namespace:stats' >> >> ERROR: lazy loading failed for package ‘pbkrtest’ >> >> * removing ‘/usr/lib/R/library/pbkrtest’ >> >> * restoring previous ‘/usr/lib/R/library/pbkrtest’ >> >> >> >> The downloaded source packages are in >> >> ‘/tmp/RtmppHtiuJ/downloaded_packages’ >> >> Updating HTML index of packages in '.Library' >> >> Making 'packages.html' ... done >> >> Warning message: >> >> In install.packages(update[instlib == l, "Package"], l, contriburl = >> >> contriburl, : >> >> installation of package ‘pbkrtest’ had non-zero exit status >> >> >> >> Advice needed. >> > >> > >> > I don't see that. You need to give more details: I'd start with >> > sessionInfo(), and the version number of the pbkrtest package that you're >> > trying to install. (If R is downloading it for you, >> > available.packages()["pbkrtest",] will give lots of useful information.) >> > >> > Duncan Murdoch >> > >> > ______________________________________________ >> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >> > https://stat.ethz.ch/mailman/listinfo/r-help >> > PLEASE do read the posting guide >> > http://www.R-project.org/posting-guide.html >> > and provide commented, minimal, self-contained, reproducible code. > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
