On 05/17/2015 01:52 PM, Lyle Warren wrote:
Thanks Jeff, Bert!
You are right - definitely out of my skill area.. I've no found some help
on the bioconductor mailing list.
I'm not sure that you've asked in the right place
https://support.bioconductor.org
see also http://www.vincebuffalo.com/2012/03/12/23andme-gwascat.html which is a
little dated and maybe not relevant to your question.
A little tangentially, see also https://support.bioconductor.org/p/67444/
Martin Morgan
On 18 May 2015 at 03:04, Bert Gunter <gunter.ber...@gene.com> wrote:
(No response necessary)
What struck me about this post was the apparent mismatch: the OP
seemed not to have a clue where to begin. Maybe he somehow has been
assigned or chose a task for which his skills and background are
inadequate. This is not really a criticism: if someone told me to make
a dining room set, my reply would be: "Either find someone else or see
you in about a year after which I may have learned enough to attempt
the task. "
So maybe the OP should give up looking for internet advice altogether
and find someone local to work with?
And, of course, apologies if I have misinterpreted.
Cheers,
Bert
Bert Gunter
Genentech Nonclinical Biostatistics
(650) 467-7374
"Data is not information. Information is not knowledge. And knowledge
is certainly not wisdom."
Clifford Stoll
On Sun, May 17, 2015 at 9:52 AM, Jeff Newmiller
<jdnew...@dcn.davis.ca.us> wrote:
This is a very domain-specific question (genetic data analysis), not so
much a question about how to use R, so does not seem on topic here. I also
suspect that the company 23andme may use some proprietary algorithms, so
"replicating their results" could be a tall order.
You might start with the CRAN "Statistical Genetics" task view, and a
textbook on the subject. The Bioconductor project may also be a useful
resource.
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On May 16, 2015 6:53:46 AM PDT, Lyle Warren <lyl...@gmail.com> wrote:
Hi,
I'm trying to replicate 23andMe's parentage test results within R,
using
the 23andme raw data. Does anyone know a simple way to do this? I have
read
the data with gwascat and it seems to be in there fine.
Thanks for any help you can give!
Cheers,
Lyle
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