Clint,
Thank you!
Problem solved.
John
John David Sorkin M.D., Ph.D.
Professor of Medicine
Chief, Biostatistics and Informatics
University of Maryland School of Medicine Division of Gerontology and
Geriatric Medicine
Baltimore VA Medical Center
10 North Greene Street
GRECC (BT/18/GR)
Baltimore, MD 21201-1524
(Phone) 410-605-7119
(Fax) 410-605-7913 (Please call phone number above prior to faxing)
>>> Clint Bowman <cl...@ecy.wa.gov> 1/21/2014 6:57 PM >>>
There is the error message:
Error : package ‘lattice’ was built before R 3.0.0: please re-install
it
Perhaps the problem lies there.
Clint BowmanINTERNET:cl...@ecy.wa.gov
Air Quality ModelerINTERNET:cl...@math.utah.edu
Department of EcologyVOICE:(360) 407-6815
PO Box 47600FAX:(360) 407-7534
Olympia, WA 98504-7600
USPS: PO Box 47600, Olympia, WA 98504-7600
Parcels: 300 Desmond Drive, Lacey, WA 98503-1274
On Tue, 21 Jan 2014, John Sorkin wrote:
> I am running R under Linux Mint 15 and trying to download and
install
> nlme. During the download I get an error message:
> Warning message:
> In install.packages("nlme") :
> installation of package ‘nlme’ had non-zero exit status
>
> When I try to load the package, I get an error message
>> library(nlme)
> Error: package ‘nlme’ was built before R 3.0.0: please re-install it
> Why am I getting the error message, and what can I do to fix the
> problem? Please see output of R session below.
> Thank you,
> John
>
>
>> version
> platform i486-pc-linux-gnu
> arch i486
> os linux-gnu
> system i486, linux-gnu
> status
> major 3
> minor 0.1
> year 2013
> month 05
> day 16
> svn rev 62743
> language R
> version.string R version 3.0.1 (2013-05-16)
> nickname Good Sport
>
>
>> install.packages("nlme")
> Installing package into ‘/home/john/R/i486-pc-linux-gnu-library/3.0’
> (as ‘lib’ is unspecified)
> --- Please select a CRAN mirror for use in this session ---
> trying URL
>
'http://watson.nci.nih.gov/cran_mirror/src/contrib/nlme_3.1-113.tar.gz'
> Content type 'application/octet-stream' length 752188 bytes (734 Kb)
> opened URL
> ==================================================
> downloaded 734 Kb
>
> * installing *source* package ‘nlme’ ...
> ** package ‘nlme’ successfully unpacked and MD5 sums checked
> ** libs
> gfortran -fpic -O2 -pipe -g -c chol.f -o chol.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG
-fvisibility=hidden
> -fpic -O2 -pipe -g -c corStruct.c -o corStruct.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG
-fvisibility=hidden
> -fpic -O2 -pipe -g -c gnls.c -o gnls.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG
-fvisibility=hidden
> -fpic -O2 -pipe -g -c init.c -o init.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG
-fvisibility=hidden
> -fpic -O2 -pipe -g -c matrix.c -o matrix.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG
-fvisibility=hidden
> -fpic -O2 -pipe -g -c nlOptimizer.c -o nlOptimizer.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG
-fvisibility=hidden
> -fpic -O2 -pipe -g -c nlme.c -o nlme.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG
-fvisibility=hidden
> -fpic -O2 -pipe -g -c nlmefit.c -o nlmefit.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG
-fvisibility=hidden
> -fpic -O2 -pipe -g -c nls.c -o nls.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG
-fvisibility=hidden
> -fpic -O2 -pipe -g -c pdMat.c -o pdMat.o
> gfortran -fpic -O2 -pipe -g -c rs.f -o rs.o
> gcc -std=gnu99 -shared -o nlme.so chol.o corStruct.o gnls.o init.o
> matrix.o nlOptimizer.o nlme.o nlmefit.o nls.o pdMat.o rs.o
-lgfortran
> -lm -lquadmath -L/usr/lib/R/lib -lR
> installing to /home/john/R/i486-pc-linux-gnu-library/3.0/nlme/libs
> ** R
> ** data
> *** moving datasets to lazyload DB
> ** inst
> ** byte-compile and prepare package for lazy loading
> Error : package ‘lattice’ was built before R 3.0.0: please re-install
it
> ERROR: lazy loading failed for package ‘nlme’
> * removing ‘/home/john/R/i486-pc-linux-gnu-library/3.0/nlme’
>
> The downloaded source packages are in
> ‘/tmp/Rtmpo7eFZf/downloaded_packages’
> Warning message:
> In install.packages("nlme") :
> installation of package ‘nlme’ had non-zero exit status
>> library(nlme)
> Error: package ‘nlme’ was built before R 3.0.0: please re-install it
>
>
>
>
> John David Sorkin M.D., Ph.D.
> Professor of Medicine
> Chief, Biostatistics and Informatics
> University of Maryland School of Medicine Division of Gerontology
and
> Geriatric Medicine
> Baltimore VA Medical Center
> 10 North Greene Street
> GRECC (BT/18/GR)
> Baltimore, MD 21201-1524
> (Phone) 410-605-7119
> (Fax) 410-605-7913 (Please call phone number above prior to faxing)
>
> CThis email message, including any attachments, is for the sole use
of
> the intended recipient(s) and may contain confidential and
privileged
> information. Any unauthorized use, disclosure or distribution is
> prohibited. If you are not the intended recipient, please contact
the
> sender by reply email and destroy all copies of the original
message.
>
Confidentiality Statement:
This email message, including any attachments, is for the sole use of
the intended recipient(s) and may contain confidential and privileged
information. Any unauthorized use, disclosure or distribution is
prohibited. If you are not the intended recipient, please contact the
sender by reply email and destroy all copies of the original message.
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
