I am running R under Linux Mint 15 and trying to download and install
nlme. During the download I get an error message:
Warning message:
In install.packages("nlme") :
installation of package ‘nlme’ had non-zero exit status
When I try to load the package, I get an error message
> library(nlme)
Error: package ‘nlme’ was built before R 3.0.0: please re-install it
Why am I getting the error message, and what can I do to fix the
problem? Please see output of R session below.
Thank you,
John
>version
platform i486-pc-linux-gnu
arch i486
os linux-gnu
system i486, linux-gnu
status
major 3
minor 0.1
year 2013
month 05
day 16
svn rev 62743
language R
version.string R version 3.0.1 (2013-05-16)
nickname Good Sport
> install.packages("nlme")
Installing package into ‘/home/john/R/i486-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
trying URL
'http://watson.nci.nih.gov/cran_mirror/src/contrib/nlme_3.1-113.tar.gz'
Content type 'application/octet-stream' length 752188 bytes (734 Kb)
opened URL
==================================================
downloaded 734 Kb
* installing *source* package ‘nlme’ ...
** package ‘nlme’ successfully unpacked and MD5 sums checked
** libs
gfortran -fpic -O2 -pipe -g -c chol.f -o chol.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c corStruct.c -o corStruct.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c gnls.c -o gnls.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c init.c -o init.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c matrix.c -o matrix.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c nlOptimizer.c -o nlOptimizer.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c nlme.c -o nlme.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c nlmefit.c -o nlmefit.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c nls.c -o nls.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c pdMat.c -o pdMat.o
gfortran -fpic -O2 -pipe -g -c rs.f -o rs.o
gcc -std=gnu99 -shared -o nlme.so chol.o corStruct.o gnls.o init.o
matrix.o nlOptimizer.o nlme.o nlmefit.o nls.o pdMat.o rs.o -lgfortran
-lm -lquadmath -L/usr/lib/R/lib -lR
installing to /home/john/R/i486-pc-linux-gnu-library/3.0/nlme/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error : package ‘lattice’ was built before R 3.0.0: please re-install it
ERROR: lazy loading failed for package ‘nlme’
* removing ‘/home/john/R/i486-pc-linux-gnu-library/3.0/nlme’
The downloaded source packages are in
‘/tmp/Rtmpo7eFZf/downloaded_packages’
Warning message:
In install.packages("nlme") :
installation of package ‘nlme’ had non-zero exit status
> library(nlme)
Error: package ‘nlme’ was built before R 3.0.0: please re-install it
John David Sorkin M.D., Ph.D.
Professor of Medicine
Chief, Biostatistics and Informatics
University of Maryland School of Medicine Division of Gerontology and
Geriatric Medicine
Baltimore VA Medical Center
10 North Greene Street
GRECC (BT/18/GR)
Baltimore, MD 21201-1524
(Phone) 410-605-7119
(Fax) 410-605-7913 (Please call phone number above prior to faxing)
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