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On 01/09/14, 10:35 , Berwin A Turlach wrote: > G'day Rainer, Hi Berwin, > > On Thu, 09 Jan 2014 10:10:43 +0100 Rainer M Krug <rai...@krugs.de> > wrote: > >> is there an easy way of re-installing all packages in my user >> library? I am not referring to checkBuilt=TRUE, but re-install >> all packages, irrespective of the version. > > Something like: > > R> ip <- installed.packages() R> colnames(ip) [1] "Package" > "LibPath" [3] "Version" "Priority" [5] "Depends" > "Imports" [7] "LinkingTo" "Suggests" [9] "Enhances" > "License" [11] "License_is_FOSS" "License_restricts_use" [13] > "OS_type" "MD5sum" [15] "NeedsCompilation" > "Built" R> unique(ip[,"Priority"]) [1] NA "recommended" > "base" R> install.packages(ip[is.na(ip[,"Priority"]), "Package"]) > > perhaps? > > The last command is, obviously, not tested. This supposes that you > do not want to reinstall the "recommended" or "base" packages > (probably best to just use "update.packages()" to update those). Yes - I only want to re-install the user installed packages, which are in .libPaths()[1] in my case, so I did: ip <- installed.packages(lib.loc=.libPaths()[1]) install.packages(ip["Package"], type="source") and off I go. Installing them at the moment. It just would be nice to have an argument in update.packages() like reinstallAll=FALSE which, if set to TRUE, would reinstall all installed packages in the lib.loc. Thanks, Rainer > > Best wishes, > > Berwin > > ========================== Full address > ============================ A/Prof Berwin A Turlach > Tel.: +61 (8) 6488 3338 (secr) School of Maths and Stats (M019) > +61 (8) 6488 3383 (self) The University of Western Australia FAX > : +61 (8) 6488 1028 35 Stirling Highway Crawley WA 6009 > e-mail: berwin.turl...@gmail.com Australia > http://www.maths.uwa.edu.au/~berwin > http://www.researcherid.com/rid/A-4995-2008 > - -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0)6 85 62 59 98 Fax : +33 - (0)9 58 10 27 44 Fax (D): +49 - (0)3 21 21 25 22 44 email: rai...@krugs.de Skype: RMkrug -----BEGIN PGP SIGNATURE----- Version: GnuPG/MacGPG2 v2.0.22 (Darwin) Comment: Using GnuPG with Thunderbird - http://www.enigmail.net/ iQEcBAEBAgAGBQJSznAeAAoJENvXNx4PUvmC2bYIAJOiKGvSZsvFL05/MewA/Xie mzcm0wcl7ZXMzNyzV2sUXFcI/V8CUly57dqaORYtgIO8L6wi0JdHP90vegPVUsn1 uRQ+eswWNnuQ5Dy/KVfylJg5vJV+6xW6ivSFlDX5XRmhn9RXfb1T6hwX5IuoeufV OdJW/h5b66QLgOZC28QWnx0UIxWbWYEg7BHT3wFFwViZ/lKQ3+S0JoXulULfxQZ0 4bTZcfI2IflrXJ7tN4dL/jISiJreaIxI4WUMgBoZ6cjvXhI/uQPVGXSfhTGs22TU UWXEtfVm0ZWYvF8BAsYqrPmffOUc64nFXFavHIaZAGoHvVfXBvB8wrEviQ5j3a8= =fD0/ -----END PGP SIGNATURE----- ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
