To make it easier for R-help readers to help you, please you provide the before UUU[2] data using the dput() function.
dput(UUU[2]) Jean On Thu, May 16, 2013 at 11:12 AM, Aldi <a...@dsgmail.wustl.edu> wrote: > Hi, If I have an R object UUU, where the second element is U2, based on > "g" column of my.table > > my.table of UUU is: > mmm ggg gindex map Info > aaa123 U1 1 1 1 > aaa124 U1 1 2 1 > bbb1378 U2 2 1 1 > bbb8888 U2 2 2 0 > bbb1389 U2 2 3 1 > ccc2222 Z3 3 1 1 > ccc33333 Z3 3 2 0 > ccc4444 Z3 3 3 1 > ccc55555 Z3 3 4 0 > > Before (see Before) the analysis I had dropped those "mmm" rows from > my.table of UUU that had Info==0, thus not included in the analysis. > After (see After) analysis found that I need to add bbb8888 (in the second > position, as defined by map) for U2, ccc3333 and ccc5555 for Z3 and s.o. > The bbb8888, does not have any info in general, but a collaborator is > saying that he needs the bbb8888 for documentation in the UUU object. > A solution is to rerun the analysis, but the list is very long, the > analysis will take 1 day. Is there any ready function that can modify an > object? Or at least shows principles how to modify an object? > I have labeled elements of U2 as (e) which needs an NA in the second > position; (d) needs a name bbb8888 as a second column and as a second row > and correspondingly in its rows and columns use value 1.0; NO change for > (c); adding 0.0 in the second position for (b); and NO change for (a). (see > After) Thank you in advance, Aldi > > Before: > ======= > > UUU[2] > $U2 > $U1$scores (e) > [1] -1.946707 -57.970488 > > $U2$cov (d) > bbb1378 bbb1379 > bbb1378 1.10362564 -0.01222695 > bbb1379 -0.01222695 26.88805020 > > $U2$n (c) > [1] 1802 > > $U1$maf (b) > [1] 0.0002774695 0.0077691454 > > $U2$sey (a) > [1] 13.3867 > > After: > ===== > > UUU[2] > $U2 > $U2$scores (e) > [1] -1.946707 NA -57.970488 > > $U2$cov (d) > bbb1378 bbb8888 bbb1379 > bbb1378 1.10362564 1.0 -0.01222695 > bbb8888 1.0 1.0 1.0 > bbb1379 -0.01222695 1.0 26.88805020 > > $U2$n (c) > [1] 1802 > > $U2$maf (b) > [1] 0.0002774695 0.0 0.0077691454 > > $U2$sey (a) > [1] 13.3867 > > -- > > ______________________________**________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/**listinfo/r-help<https://stat.ethz.ch/mailman/listinfo/r-help> > PLEASE do read the posting guide http://www.R-project.org/** > posting-guide.html <http://www.R-project.org/posting-guide.html> > and provide commented, minimal, self-contained, reproducible code. > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
