Hi, If I have an R object UUU, where the second element is U2, based on
"g" column of my.table
my.table of UUU is:
mmm ggg gindex map Info
aaa123 U1 1 1 1
aaa124 U1 1 2 1
bbb1378 U2 2 1 1
bbb8888 U2 2 2 0
bbb1389 U2 2 3 1
ccc2222 Z3 3 1 1
ccc33333 Z3 3 2 0
ccc4444 Z3 3 3 1
ccc55555 Z3 3 4 0
Before (see Before) the analysis I had dropped those "mmm" rows from
my.table of UUU that had Info==0, thus not included in the analysis.
After (see After) analysis found that I need to add bbb8888 (in the
second position, as defined by map) for U2, ccc3333 and ccc5555 for Z3
and s.o.
The bbb8888, does not have any info in general, but a collaborator is
saying that he needs the bbb8888 for documentation in the UUU object.
A solution is to rerun the analysis, but the list is very long, the
analysis will take 1 day. Is there any ready function that can modify an
object? Or at least shows principles how to modify an object?
I have labeled elements of U2 as (e) which needs an NA in the second
position; (d) needs a name bbb8888 as a second column and as a second
row and correspondingly in its rows and columns use value 1.0; NO change
for (c); adding 0.0 in the second position for (b); and NO change for
(a). (see After) Thank you in advance, Aldi
Before:
=======
> UUU[2]
$U2
$U1$scores (e)
[1] -1.946707 -57.970488
$U2$cov (d)
bbb1378 bbb1379
bbb1378 1.10362564 -0.01222695
bbb1379 -0.01222695 26.88805020
$U2$n (c)
[1] 1802
$U1$maf (b)
[1] 0.0002774695 0.0077691454
$U2$sey (a)
[1] 13.3867
After:
=====
> UUU[2]
$U2
$U2$scores (e)
[1] -1.946707 NA -57.970488
$U2$cov (d)
bbb1378 bbb8888 bbb1379
bbb1378 1.10362564 1.0 -0.01222695
bbb8888 1.0 1.0 1.0
bbb1379 -0.01222695 1.0 26.88805020
$U2$n (c)
[1] 1802
$U2$maf (b)
[1] 0.0002774695 0.0 0.0077691454
$U2$sey (a)
[1] 13.3867
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