Hi, You can write "biomaRt::getSequence" instead of "getSequence".
Hope this helps, Pascal Le 08/02/2013 15:07, Mohammad Tanvir Ahamed a écrit :
Hi ! Facing problem with " getSequence" commend . when only biomaRt package loaded the following example working wellmart <- useMart("ensembl",dataset="hsapiens_gene_ensembl") seq = getSequence(id="BRCA1", type="hgnc_symbol", seqType="peptide", mart = mart)show(seq) but when i have loaded the seqinr, i got problem with same commend .mart <- useMart("ensembl",dataset="hsapiens_gene_ensembl") seq = getSequence(id="BRCA1", type="hgnc_symbol", seqType="peptide", mart = mart)Error in length(x) : 'x' is missing I need to use biomaRt and seqinr package together as i will use other commends from biomaRt and seqinr package . Thanks . /.......Tanvir Ahamed [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
