Hi !
Facing problem with " getSequence" commend .
when only biomaRt package loaded the following example working well
>mart <- useMart("ensembl",dataset="hsapiens_gene_ensembl")
>seq = getSequence(id="BRCA1", type="hgnc_symbol", seqType="peptide", mart =
>mart)
show(seq)
but when i have loaded the seqinr, i got problem with same commend .
> mart <- useMart("ensembl",dataset="hsapiens_gene_ensembl")
> seq = getSequence(id="BRCA1", type="hgnc_symbol", seqType="peptide", mart =
> mart)
Error in length(x) : 'x' is missing
I need to use biomaRt and seqinr package together as i will use other commends
from biomaRt and seqinr package .
Thanks .
/.......Tanvir Ahamed
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