On Nov 17, 2012, at 9:55 AM, Vittoria Roncalli wrote:
Hi,
I am really new to edge R and I have used it to calculate gene
expression
with RNASeq data comparing 2 different conditions.
I used a P value of 0.05 and I got a list of DGE contigs up and down
regulated.
WhatI was wondering is how to convert the logFC value that appear in
the
output of the exact test.
Is it a log2 base? Is fold 2 change considered as cutoff?
I am trying to find this info on the manual but apparently I am not
able.
Could someone help me?
I suspect you should be posing this question to the BioConductor
mailing list. You really ought to include more information about what
packages you are using and preferably include analysis code and enough
code to construct an example.
--
David Winsemius, MD
Alameda, CA, USA
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