Hi,
I am really new to edge R and I have used it to calculate gene expression
with RNASeq data comparing 2 different conditions.
I used a P value of 0.05 and I got a list of DGE contigs up and down
regulated.
WhatI was wondering is how to convert the logFC value that appear in the
output of the exact test.
Is it a log2 base? Is fold 2 change considered as cutoff?
I am trying to find this info on the manual but apparently I am not able.
Could someone help me?
Thanks so much
Vittoria
--
Vittoria Roncalli
Graduate Research Assistant
Center Békésy Laboratory of Neurobiology
Pacific Biosciences Research Center
University of Hawaii at Manoa
1993 East-West Road
Honolulu, HI 96822 USA
Tel: 808-4695693
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