My apologies: the posting guide doesn't actually suggest updating to the most recent stable version -- though perhaps it would be a good addition to the "before posting" section -- but I still think that's the necessary fix to your problem.
Michael On Wed, Nov 30, 2011 at 1:08 PM, R. Michael Weylandt <michael.weyla...@gmail.com> wrote: > As the posting guide strongly suggests, I think the first step is to > update to R 2.14: there have been changes in package design and I'm > not sure back-compatibility will run that far. Doing so should let you > download fresh binaries straight from BioC. > > I'm not sure why you would get compilation errors if you are just > installing a binary -- are you sure you're doing it right? What are > your commands? > > I think follow-up should be directed to the dedicated BioConductor > list, but I assume they will tell you the same thing: 1) Update R and > try to install prepackaged libraries; 2) install local copies of the > binaries; 3) only compile from source if needed (you probably don't > have a fortran compiler which seems to be part of the problem) > > Michael > > On Wed, Nov 30, 2011 at 12:57 PM, UyenThao Nguyen <ungu...@tethysbio.com> > wrote: >> Hi All, >> >> I've tried to install these "multtest" and "preprocessCore" packages in Mac, >> but kept getting error messages. I tried to load the packages using 2 ways: >> >> 1. Installed from BioConductor (sources) >> 2. And installed from BioConductor (binaries) >> >> Both ways, I got these error messages: >> >> For preprocessCore: >> ld: warning: directory '/usr/local/lib' following -L not found >> ld: library not found for -lgfortran >> collect2: ld returned 1 exit status >> make: *** [preprocessCore.so] Error 1 >> ERROR: compilation failed for package ‘preprocessCore’ >> * removing >> ‘/Library/Frameworks/R.framework/Versions/2.10/Resources/library/preprocessCore’ >> * restoring previous >> ‘/Library/Frameworks/R.framework/Versions/2.10/Resources/library/preprocessCore’ >> >> >> >> For multtest: >> ld: warning: directory '/usr/local/lib' following -L not found >> ** arch - x86_64 >> >> >> Looks like the error got to do with L drive, which I don't know how to fix >> it. Please help. Any suggestions will be greatly appreciated. >> >> Thank you very much, >> Nguyen >> >> ______________________________________________ >> R-help@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. >> > ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
