As the posting guide strongly suggests, I think the first step is to update to R 2.14: there have been changes in package design and I'm not sure back-compatibility will run that far. Doing so should let you download fresh binaries straight from BioC.
I'm not sure why you would get compilation errors if you are just installing a binary -- are you sure you're doing it right? What are your commands? I think follow-up should be directed to the dedicated BioConductor list, but I assume they will tell you the same thing: 1) Update R and try to install prepackaged libraries; 2) install local copies of the binaries; 3) only compile from source if needed (you probably don't have a fortran compiler which seems to be part of the problem) Michael On Wed, Nov 30, 2011 at 12:57 PM, UyenThao Nguyen <ungu...@tethysbio.com> wrote: > Hi All, > > I've tried to install these "multtest" and "preprocessCore" packages in Mac, > but kept getting error messages. I tried to load the packages using 2 ways: > > 1. Installed from BioConductor (sources) > 2. And installed from BioConductor (binaries) > > Both ways, I got these error messages: > > For preprocessCore: > ld: warning: directory '/usr/local/lib' following -L not found > ld: library not found for -lgfortran > collect2: ld returned 1 exit status > make: *** [preprocessCore.so] Error 1 > ERROR: compilation failed for package ‘preprocessCore’ > * removing > ‘/Library/Frameworks/R.framework/Versions/2.10/Resources/library/preprocessCore’ > * restoring previous > ‘/Library/Frameworks/R.framework/Versions/2.10/Resources/library/preprocessCore’ > > > > For multtest: > ld: warning: directory '/usr/local/lib' following -L not found > ** arch - x86_64 > > > Looks like the error got to do with L drive, which I don't know how to fix > it. Please help. Any suggestions will be greatly appreciated. > > Thank you very much, > Nguyen > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
