On 19.11.2011 00:14, Vincent Plagnol wrote:
Dear colleagues,
I am having issues trying to build a R package I recently wrote.
I am using R 2.14.0 and my package depends on another package called aod.
Running:
R CMD Sweave vignette.Rnw
is perfectly fine and the vignette compiles properly.
but when I use
R CMD build mypackage
to build the tar.gz I get the following error:
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: aod
Warning in library(pkg, character.only = TRUE, logical.return = TRUE,
lib.loc = lib.loc) :
there is no package called ‘aod’
Error: processing vignette ‘ExomeDepth-vignette.Rnw’ failed with
diagnostics:
chunk 1 (label = load)
Error : package ‘aod’ could not be loaded
Execution halted
I can fix the issue by inserting the following line into my vignette:
.libPaths(c("/ugi/home/shared/vincent/libraries/R/installed", .libPaths()))
where the path specifies the installation path to my R packages. But
clearly this should not be part of the vignette.
Basically I cannot find a good way to specify a path to my installed
packages when I run
R CMD build
I cannot find the right info. I am probably being slow but if someone could
point me to the right direction, any help would be very much appreciated.
If the packages are not on your default search path, set the environment
variable R_LIBS appropriately before running R CMD build.
Best,
Uwe Ligges
Thank you in advance,
Vincent
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