Dear colleagues,
I am having issues trying to build a R package I recently wrote.
I am using R 2.14.0 and my package depends on another package called aod.
Running:
R CMD Sweave vignette.Rnw
is perfectly fine and the vignette compiles properly.
but when I use
R CMD build mypackage
to build the tar.gz I get the following error:
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: aod
Warning in library(pkg, character.only = TRUE, logical.return = TRUE,
lib.loc = lib.loc) :
there is no package called aod
Error: processing vignette ExomeDepth-vignette.Rnw failed with
diagnostics:
chunk 1 (label = load)
Error : package aod could not be loaded
Execution halted
I can fix the issue by inserting the following line into my vignette:
.libPaths(c("/ugi/home/shared/vincent/libraries/R/installed", .libPaths()))
where the path specifies the installation path to my R packages. But
clearly this should not be part of the vignette.
Basically I cannot find a good way to specify a path to my installed
packages when I run
R CMD build
I cannot find the right info. I am probably being slow but if someone could
point me to the right direction, any help would be very much appreciated.
Thank you in advance,
Vincent
--
Vincent Plagnol
University College London Genetics Institute
Darwin building, office 210
Gower Street, London, WC1E 6BT
Cell: +44-(0)7946-546923
Office: +44-(0) 2031-084002
Website: http://www.ucl.ac.uk/ugi/research/VincentPlagnol
ResearcherID: http://www.researcherid.com/rid/A-5667-2011
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