You can also specify the full path of the latex package, for me:
\usepackage{/usr/local/lib/R/share/texmf/Sweave}
Regards,
Romain
ONKELINX, Thierry wrote:
> It works fine with me (on windows). But I've copied sweave.sty into my
> workdirectory. See the Sweave FAQ
> (http://www.ci.tuwien.ac.at/~leisch/Sweave/FAQ.html#x1-14000A.12)
>
>
> ------------------------------------------------------------------------
> ----
> ir. Thierry Onkelinx
> Instituut voor natuur- en bosonderzoek / Research Institute for Nature
> and Forest
> Cel biometrie, methodologie en kwaliteitszorg / Section biometrics,
> methodology and quality assurance
> Gaverstraat 4
> 9500 Geraardsbergen
> Belgium
> tel. + 32 54/436 185
> [EMAIL PROTECTED]
> www.inbo.be
>
> Do not put your faith in what statistics say until you have carefully
> considered what they do not say. ~William W. Watt
> A statistical analysis, properly conducted, is a delicate dissection of
> uncertainties, a surgery of suppositions. ~M.J.Moroney
>
>
>
>
>> -----Oorspronkelijk bericht-----
>> Van: Rainer M Krug [mailto:[EMAIL PROTECTED]
>> Verzonden: woensdag 17 oktober 2007 14:17
>> Aan: ONKELINX, Thierry
>> CC: r-help
>> Onderwerp: Re: [R] One pdf file with plots and text output
>>
>> I am getting somewhere - but running system("pdflatex
>> GrowthAll") fails, as it does not find sweave.sty. I already
>> linked the directory where it can be found
>> (/usr/lib/R/share/texmf/) into my personal texfm directory
>> (/texmf/tex/latex/R)\ and ran texhash (as root and as n ormal
>> user), but it still does not find it. If I enter the filename
>> manually, pdflatex works.
>>
>> Any ideas?
>>
>> Rainer
>>
>>
>> ONKELINX, Thierry wrote:
>>
>>> You create a source file ("GrowthAll.Rnw") that looks a bit
>>>
>> like this
>>
>>> \documentclass[11pt]{report}
>>> \usepackage{Sweave}
>>> \SweaveOpts{echo = FALSE}
>>> \begin{document}
>>>
>>> <<fig = T>>=
>>> x.lm <- lm()
>>> plot(x.lm)
>>> @
>>>
>>> <<>>=
>>> summary(x.lm)
>>> @
>>> \end{document}
>>>
>>>
>>> Then run in R:
>>> Sweave("GrowthAll.Rnw")
>>> system("pdflatex GrowthAll")
>>>
>>> Have a look at the Sweave manual. It contains some examples.
>>>
>>> HTH,
>>>
>>> Thierry
>>>
>>>
>>>
>> ----------------------------------------------------------------------
>>
>>> --
>>> ----
>>> ir. Thierry Onkelinx
>>> Instituut voor natuur- en bosonderzoek / Research Institute
>>>
>> for Nature
>>
>>> and Forest Cel biometrie, methodologie en kwaliteitszorg / Section
>>> biometrics, methodology and quality assurance Gaverstraat 4 9500
>>> Geraardsbergen Belgium tel. + 32 54/436 185
>>>
>> [EMAIL PROTECTED]
>>
>>> www.inbo.be
>>>
>>> Do not put your faith in what statistics say until you have
>>>
>> carefully
>>
>>> considered what they do not say. ~William W. Watt A statistical
>>> analysis, properly conducted, is a delicate dissection of
>>> uncertainties, a surgery of suppositions. ~M.J.Moroney
>>>
>>>
>>>
>>>
>>>> -----Oorspronkelijk bericht-----
>>>> Van: Rainer M Krug [mailto:[EMAIL PROTECTED]
>>>> Verzonden: woensdag 17 oktober 2007 11:28
>>>> Aan: ONKELINX, Thierry
>>>> CC: Prof Brian Ripley; r-help
>>>> Onderwerp: Re: [R] One pdf file with plots and text output
>>>>
>>>> ONKELINX, Thierry wrote:
>>>>
>>>>> I use Sweave for this kind of purposes.
>>>>>
>>>> I was thinking about Sweave as well, but I don't
>>>>
>> understand how I can
>>
>>>> use it.
>>>>
>>>> Let's say I have a source file, which defines a function
>>>>
>>>> DoGrowthAll <- function()
>>>> {
>>>> pdf("GrowthAll.pdf", height=11, width=8, paper="a4")
>>>> sink("GrowthAll.txt")
>>>> try(
>>>> {
>>>> plot(x.lm)
>>>> summary(xlm)
>>>> .
>>>> .
>>>> .
>>>> }
>>>> )
>>>> sink()
>>>> dev.off()
>>>> system("xpdf ./GrowthAll.pdf", wait=FALSE)
>>>> }
>>>>
>>>> Now how can I use Sweave to create this report?
>>>>
>>>> Rainer
>>>>
>>>>
>>>>> HTH,
>>>>>
>>>>> Thierry
>>>>>
>>>>>
>>>>>
>> ---------------------------------------------------------------------
>>
>>>> -
>>>>
>>>>> --
>>>>> ----
>>>>> ir. Thierry Onkelinx
>>>>> Instituut voor natuur- en bosonderzoek / Research Institute
>>>>>
>>>> for Nature
>>>>
>>>>> and Forest Cel biometrie, methodologie en kwaliteitszorg
>>>>>
>> / Section
>>
>>>>> biometrics, methodology and quality assurance Gaverstraat 4 9500
>>>>> Geraardsbergen Belgium tel. + 32 54/436 185
>>>>>
>>>> [EMAIL PROTECTED]
>>>>
>>>>> www.inbo.be
>>>>>
>>>>> Do not put your faith in what statistics say until you have
>>>>>
>>>> carefully
>>>>
>>>>> considered what they do not say. ~William W. Watt A statistical
>>>>> analysis, properly conducted, is a delicate dissection of
>>>>> uncertainties, a surgery of suppositions. ~M.J.Moroney
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>> -----Oorspronkelijk bericht-----
>>>>>> Van: [EMAIL PROTECTED]
>>>>>> [mailto:[EMAIL PROTECTED] Namens Rainer M Krug
>>>>>> Verzonden: woensdag 17 oktober 2007 11:02
>>>>>> Aan: Prof Brian Ripley
>>>>>> CC: r-help
>>>>>> Onderwerp: Re: [R] One pdf file with plots and text output
>>>>>>
>>>>>> Prof Brian Ripley wrote:
>>>>>>
>>>>>>> On Wed, 17 Oct 2007, Rainer M Krug wrote:
>>>>>>>
>>>>>>>
>>>>>>>> Hi
>>>>>>>>
>>>>>>>> I create one pdf file with plots via pdf() and one text
>>>>>>>>
>>>> file with
>>>>
>>>>>>>> text via sink() that works very nice. But I would prefer
>>>>>>>>
>>>>>> to have one
>>>>>>
>>>>>>>> pdf file with plots and the text which I store in the
>>>>>>>>
>>>>>> te=xt file via sink(). I.e.
>>>>>>
>>>>>>>> x.lm<-lm(...)
>>>>>>>> pdf()
>>>>>>>> plot(x.lm)
>>>>>>>> NOW THE TEXT OF summary(xlm) IN THE PDF FILE
>>>>>>>> dev.off()
>>>>>>>>
>>>>>>>> Is this possible or is there a different format which I
>>>>>>>>
>>>> could use?
>>>>
>>>>>>> You can easily post-process the files to obtain a single
>>>>>>>
>>>>>> file. Going
>>>>>>
>>>>>>> from text to pdf involves many arbitrary choices, but a
>>>>>>>
>> good text
>>
>>>>>>> processor will help you make those and incorporate pdf
>>>>>>>
>> figures: I
>>
>>>>>>> would use pdflatex, but there are many other tools to
>>>>>>>
>> do the job.
>>
>>>>>> Thanks for pointing out the post-processing route (I have done
>>>>>> similar script based pdf creations via pdflatex before),
>>>>>>
>>>> but I would
>>>>
>>>>>> like to have something only for me to make it easier to read the
>>>>>> results.
>>>>>> It does not need to be nicely layouted - just the text in
>>>>>>
>>>> the pdf in
>>>>
>>>>>> whatever font would be fine.
>>>>>>
>>>>>> ______________________________________________
>>>>>> R-help@r-project.org mailing list
>>>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>>>> PLEASE do read the posting guide
>>>>>> http://www.R-project.org/posting-guide.html
>>>>>> and provide commented, minimal, self-contained,
>>>>>>
>> reproducible code.
>>
>>>>> ______________________________________________
>>>>> R-help@r-project.org mailing list
>>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>>> PLEASE do read the posting guide
>>>>> http://www.R-project.org/posting-guide.html
>>>>> and provide commented, minimal, self-contained, reproducible code.
>>>>>
>>> ______________________________________________
>>> R-help@r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide
>>> http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>>>
>>
>
> ______________________________________________
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
>
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