It works fine with me (on windows). But I've copied sweave.sty into my workdirectory. See the Sweave FAQ (http://www.ci.tuwien.ac.at/~leisch/Sweave/FAQ.html#x1-14000A.12)
------------------------------------------------------------------------ ---- ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest Cel biometrie, methodologie en kwaliteitszorg / Section biometrics, methodology and quality assurance Gaverstraat 4 9500 Geraardsbergen Belgium tel. + 32 54/436 185 [EMAIL PROTECTED] www.inbo.be Do not put your faith in what statistics say until you have carefully considered what they do not say. ~William W. Watt A statistical analysis, properly conducted, is a delicate dissection of uncertainties, a surgery of suppositions. ~M.J.Moroney > -----Oorspronkelijk bericht----- > Van: Rainer M Krug [mailto:[EMAIL PROTECTED] > Verzonden: woensdag 17 oktober 2007 14:17 > Aan: ONKELINX, Thierry > CC: r-help > Onderwerp: Re: [R] One pdf file with plots and text output > > I am getting somewhere - but running system("pdflatex > GrowthAll") fails, as it does not find sweave.sty. I already > linked the directory where it can be found > (/usr/lib/R/share/texmf/) into my personal texfm directory > (/texmf/tex/latex/R)\ and ran texhash (as root and as n ormal > user), but it still does not find it. If I enter the filename > manually, pdflatex works. > > Any ideas? > > Rainer > > > ONKELINX, Thierry wrote: > > You create a source file ("GrowthAll.Rnw") that looks a bit > like this > > > > \documentclass[11pt]{report} > > \usepackage{Sweave} > > \SweaveOpts{echo = FALSE} > > \begin{document} > > > > <<fig = T>>= > > x.lm <- lm() > > plot(x.lm) > > @ > > > > <<>>= > > summary(x.lm) > > @ > > \end{document} > > > > > > Then run in R: > > Sweave("GrowthAll.Rnw") > > system("pdflatex GrowthAll") > > > > Have a look at the Sweave manual. It contains some examples. > > > > HTH, > > > > Thierry > > > > > ---------------------------------------------------------------------- > > -- > > ---- > > ir. Thierry Onkelinx > > Instituut voor natuur- en bosonderzoek / Research Institute > for Nature > > and Forest Cel biometrie, methodologie en kwaliteitszorg / Section > > biometrics, methodology and quality assurance Gaverstraat 4 9500 > > Geraardsbergen Belgium tel. + 32 54/436 185 > [EMAIL PROTECTED] > > www.inbo.be > > > > Do not put your faith in what statistics say until you have > carefully > > considered what they do not say. ~William W. Watt A statistical > > analysis, properly conducted, is a delicate dissection of > > uncertainties, a surgery of suppositions. ~M.J.Moroney > > > > > > > >> -----Oorspronkelijk bericht----- > >> Van: Rainer M Krug [mailto:[EMAIL PROTECTED] > >> Verzonden: woensdag 17 oktober 2007 11:28 > >> Aan: ONKELINX, Thierry > >> CC: Prof Brian Ripley; r-help > >> Onderwerp: Re: [R] One pdf file with plots and text output > >> > >> ONKELINX, Thierry wrote: > >>> I use Sweave for this kind of purposes. > >> I was thinking about Sweave as well, but I don't > understand how I can > >> use it. > >> > >> Let's say I have a source file, which defines a function > >> > >> DoGrowthAll <- function() > >> { > >> pdf("GrowthAll.pdf", height=11, width=8, paper="a4") > >> sink("GrowthAll.txt") > >> try( > >> { > >> plot(x.lm) > >> summary(xlm) > >> . > >> . > >> . > >> } > >> ) > >> sink() > >> dev.off() > >> system("xpdf ./GrowthAll.pdf", wait=FALSE) > >> } > >> > >> Now how can I use Sweave to create this report? > >> > >> Rainer > >> > >>> HTH, > >>> > >>> Thierry > >>> > >>> > >> > --------------------------------------------------------------------- > >> - > >>> -- > >>> ---- > >>> ir. Thierry Onkelinx > >>> Instituut voor natuur- en bosonderzoek / Research Institute > >> for Nature > >>> and Forest Cel biometrie, methodologie en kwaliteitszorg > / Section > >>> biometrics, methodology and quality assurance Gaverstraat 4 9500 > >>> Geraardsbergen Belgium tel. + 32 54/436 185 > >> [EMAIL PROTECTED] > >>> www.inbo.be > >>> > >>> Do not put your faith in what statistics say until you have > >> carefully > >>> considered what they do not say. ~William W. Watt A statistical > >>> analysis, properly conducted, is a delicate dissection of > >>> uncertainties, a surgery of suppositions. ~M.J.Moroney > >>> > >>> > >>> > >>>> -----Oorspronkelijk bericht----- > >>>> Van: [EMAIL PROTECTED] > >>>> [mailto:[EMAIL PROTECTED] Namens Rainer M Krug > >>>> Verzonden: woensdag 17 oktober 2007 11:02 > >>>> Aan: Prof Brian Ripley > >>>> CC: r-help > >>>> Onderwerp: Re: [R] One pdf file with plots and text output > >>>> > >>>> Prof Brian Ripley wrote: > >>>>> On Wed, 17 Oct 2007, Rainer M Krug wrote: > >>>>> > >>>>>> Hi > >>>>>> > >>>>>> I create one pdf file with plots via pdf() and one text > >> file with > >>>>>> text via sink() that works very nice. But I would prefer > >>>> to have one > >>>>>> pdf file with plots and the text which I store in the > >>>> te=xt file via sink(). I.e. > >>>>>> x.lm<-lm(...) > >>>>>> pdf() > >>>>>> plot(x.lm) > >>>>>> NOW THE TEXT OF summary(xlm) IN THE PDF FILE > >>>>>> dev.off() > >>>>>> > >>>>>> Is this possible or is there a different format which I > >> could use? > >>>>> You can easily post-process the files to obtain a single > >>>> file. Going > >>>>> from text to pdf involves many arbitrary choices, but a > good text > >>>>> processor will help you make those and incorporate pdf > figures: I > >>>>> would use pdflatex, but there are many other tools to > do the job. > >>>>> > >>>> Thanks for pointing out the post-processing route (I have done > >>>> similar script based pdf creations via pdflatex before), > >> but I would > >>>> like to have something only for me to make it easier to read the > >>>> results. > >>>> It does not need to be nicely layouted - just the text in > >> the pdf in > >>>> whatever font would be fine. > >>>> > >>>> ______________________________________________ > >>>> R-help@r-project.org mailing list > >>>> https://stat.ethz.ch/mailman/listinfo/r-help > >>>> PLEASE do read the posting guide > >>>> http://www.R-project.org/posting-guide.html > >>>> and provide commented, minimal, self-contained, > reproducible code. > >>>> > >>> ______________________________________________ > >>> R-help@r-project.org mailing list > >>> https://stat.ethz.ch/mailman/listinfo/r-help > >>> PLEASE do read the posting guide > >>> http://www.R-project.org/posting-guide.html > >>> and provide commented, minimal, self-contained, reproducible code. > >> > > > > ______________________________________________ > > R-help@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide > > http://www.R-project.org/posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > > ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
