I actually figured it out. I went back in any changed the mean difference from 2-e12 to 5e-12.
Thanks, Erin Erin Hodgess, PhD mailto: erinm.hodg...@gmail.com On Mon, Mar 4, 2019 at 2:10 AM Martin Maechler <maech...@stat.math.ethz.ch> wrote: > >>>>> Erin Hodgess > >>>>> on Fri, 1 Mar 2019 12:30:35 -0700 writes: > > > Yay! I re-installed everything and got through "Make > > distribution"! I have one more question, please: I am > > running the make check-all. I have an error at reg-1d. > > It stops the process. However, the mean difference (as > > per the file) is 2.0e-12. I'm ok with that. How do I > > bypass this, please? > > If you'd be really precise in your report (use correct file > names; show the exact error message + context lines of the *.Rout.fail > file) I could help you. > > Note (by the way) that this may be yet another example showing > that OpenBLAS may be faster but less accurate than the > (plain+ minor tweaks) version of BLAS that ships with R. > > Martin > > > Thanks, Erin > > > Erin Hodgess, PhD mailto: erinm.hodg...@gmail.com > > > > On Wed, Feb 27, 2019 at 10:22 PM Avraham Adler > > <avraham.ad...@gmail.com> wrote: > > >> I believe that repo just follows the directions on my > >> blog. Without seeing Dr. Hodges’s code, my initial > >> concern is the many references to Cygwin. My method > >> specifically does not use Cygwin but MSYS2 and > >> Mingw64/Rtools35. That will likely change to solely > >> Rtools40 once R3.6 is released due to the Msys system > >> being built in to it. > >> > >> There may be some library conflicts between Cygwin and > >> msys2/mingw64. If possible, my suggestion would be > >> uninstall everything and then just install msys2 (and add > >> in make after you to the first msys update) and rtools35. > >> Then there should be no conflicting libraries. > >> > >> Thanks, > >> > >> Avi > >> > >> On Thu, Feb 28, 2019 at 12:11 AM Kenny Bell > >> <kmbel...@gmail.com> wrote: > >> > >>> This person has had apparent success - you could follow > >>> what they did or just download their product (with > >>> appropriate caution downloading a random .exe). > >>> > >>> https://github.com/thequackdaddy/R-OpenBLAS > >>> > >>> On Thu, Feb 28, 2019 at 6:28 AM Erin Hodgess > >>> <erinm.hodg...@gmail.com> wrote: > >>> > >>> > Hello! > >>> > > >>> > I'm not sure if this is the right place to post this, > >>> so apologies > in advance if I'm not in the right list. > >>> > > >>> > I downloaded the OpenBLAS and am following Avraham > >>> Adler's great > instructions. However, when I run make, > >>> things go well to a certain point, > and then go bad: > >>> > > >>> > make > [snip] > >>> > > >>> > touch cygopenblas_haswellp-r0.3.5.a > make -j 1 -C > >>> test all > make[1]: Entering directory > > >>> '/home/erinm/OPB_HOME/xianyi-OpenBLAS-eebc189/test' > > >>> gfortran -O2 -Wall -frecursive -m64 -mavx2 -o sblat1 > >>> sblat1.o > ../cygopenblas_haswellp-r0.3.5.a > >>> -L/usr/lib/gcc/x86_64-pc-msys/7.3.0 > >>> > > >>> > -L/usr/lib/gcc/x86_64-pc-msys/7.3.0/../../../../x86_64-pc-msys/lib/../lib > >>> > -L/usr/lib/../lib > > >>> -L/usr/lib/gcc/x86_64-pc-msys/7.3.0/../../../../x86_64-pc-msys/lib > >>> > -L/usr/lib/w32api -lmsys-2.0 > > >>> > D:/msys64/usr/lib/../lib/libpthread.a(t-d001088.o):fake:(.text+0x2): > >>> > undefined reference to `__imp_pthread_mutex_destroy' > > >>> > D:/msys64/usr/lib/../lib/libpthread.a(t-d001090.o):fake:(.text+0x2): > >>> > undefined reference to `__imp_pthread_mutex_init' > > >>> > D:/msys64/usr/lib/../lib/libpthread.a(t-d001091.o):fake:(.text+0x2): > >>> > undefined reference to `__imp_pthread_mutex_lock' > > >>> > D:/msys64/usr/lib/../lib/libpthread.a(t-d001094.o):fake:(.text+0x2): > >>> > undefined reference to `__imp_pthread_mutex_trylock' > > >>> > D:/msys64/usr/lib/../lib/libpthread.a(t-d001095.o):fake:(.text+0x2): > >>> > undefined reference to `__imp_pthread_mutex_unlock' > > >>> collect2.exe: error: ld returned 1 exit status > > >>> make[1]: *** [Makefile:134: sblat1] Error 1 > make[1]: > >>> Leaving directory > > >>> '/home/erinm/OPB_HOME/xianyi-OpenBLAS-eebc189/test' > > >>> make: *** [Makefile:124: tests] Error 2 > >>> > > >>> > > >>> > I think it has something to do with the > >>> threads/pthreads but am not sure > how to fix it. Any > >>> suggestions much appreciated. > >>> > > >>> > Thanks, > Sincerely, > Erin > >>> > > >>> > Erin Hodgess, PhD > mailto: erinm.hodg...@gmail.com > >>> > > >>> > [[alternative HTML version deleted]] > >>> > > >>> > ______________________________________________ > > >>> R-devel@r-project.org mailing list > > >>> https://stat.ethz.ch/mailman/listinfo/r-devel > >>> > > >>> > >>> [[alternative HTML version deleted]] > >>> > >>> ______________________________________________ > >>> R-devel@r-project.org mailing list > >>> https://stat.ethz.ch/mailman/listinfo/r-devel > >>> > >> -- > >> Sent from Gmail Mobile > >> > > > [[alternative HTML version deleted]] > > > ______________________________________________ > > R-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-devel > [[alternative HTML version deleted]] ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
