Hey Martin,
So by trial and error, I figured out that the reason for this was that
there was a text file in the "data/" directory that shouldn't have
been there. Thanks for your help!
Paul.
On Mon, Mar 24, 2014 at 9:58 AM, Paul Geeleher <paulgeele...@gmail.com> wrote:
> Hey Martin,
>
> The output looks similar:
>
>
>> options(error=recover)
>> tools:::.build_packages("pRRophetic")
> * checking for file 'pRRophetic/DESCRIPTION' ... OK
> * preparing 'pRRophetic':
> * checking DESCRIPTION meta-information ... OK
> * installing the package to build vignettes
> -----------------------------------
> * installing *source* package 'pRRophetic' ...
> ** R
> ** data
> ** inst
> ** preparing package for lazy loading
> Warning: replacing previous import by 'genefilter::Anova' when loading
> 'pRRophetic'
> ** help
> *** installing help indices
> ** building package indices
> Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, :
> line 1 did not have 38 elements
> ERROR: installing package indices failed
> * removing '/tmp/Rtmpe59RbM/Rinst54e22da5e85a/pRRophetic'
> -----------------------------------
> ERROR: package installation failed
>
>
>
> Thanks again,
>
> Paul.
>
>
> On Mon, Mar 24, 2014 at 9:49 AM, Martin Maechler
> <maech...@stat.math.ethz.ch> wrote:
>>>>>>> Paul Geeleher <paulgeele...@gmail.com>
>>>>>>> on Mon, 24 Mar 2014 09:37:57 -0500 writes:
>>
>> > Hey Martin,
>> > Thanks for your reply. I actually have documentation, but I pasted a
>> > version of the output that was created when I removed the .Rd files
>> > (as I suspected they may be causing the problem). Here's the output
>> > when the man files are all included (its more or less the same):
>>
>>
>> > $ R CMD build --verbose r_package_files/
>> > Warning: unknown option '--verbose'
>> > * checking for file 'r_package_files/DESCRIPTION' ... OK
>> > * preparing 'pRRophetic':
>> > * checking DESCRIPTION meta-information ... OK
>> > * installing the package to build vignettes
>> > -----------------------------------
>> > * installing *source* package 'pRRophetic' ...
>> > ** R
>> > ** data
>> > ** inst
>> > ** preparing package for lazy loading
>> > Warning: replacing previous import by 'genefilter::Anova' when loading
>> > 'pRRophetic'
>> > ** help
>> > *** installing help indices
>> > ** building package indices
>> > Error in scan(file, what, nmax, sep, dec, quote, skip, nlines,
>> na.strings, :
>> > line 1 did not have 38 elements
>>
>> I see. Now try
>>
>> options(error=recover)
>> tools:::.build_packages("<your_source_package_path>/pRRophetic")
>>
>>
>> > ERROR: installing package indices failed
>> > * removing '/tmp/Rtmp6cwCZH/Rinst2f8f69e1ee/pRRophetic'
>>
>
>
>
> --
> Dr. Paul Geeleher, PhD
> Section of Hematology-Oncology
> Department of Medicine
> The University of Chicago
> 900 E. 57th St.,
> KCBD, Room 7144
> Chicago, IL 60637
> --
> www.bioinformaticstutorials.com
--
Dr. Paul Geeleher, PhD
Section of Hematology-Oncology
Department of Medicine
The University of Chicago
900 E. 57th St.,
KCBD, Room 7144
Chicago, IL 60637
--
www.bioinformaticstutorials.com
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