Hey Martin,
The output looks similar:
> options(error=recover)
> tools:::.build_packages("pRRophetic")
* checking for file 'pRRophetic/DESCRIPTION' ... OK
* preparing 'pRRophetic':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
-----------------------------------
* installing *source* package 'pRRophetic' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import by 'genefilter::Anova' when loading
'pRRophetic'
** help
*** installing help indices
** building package indices
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, :
line 1 did not have 38 elements
ERROR: installing package indices failed
* removing '/tmp/Rtmpe59RbM/Rinst54e22da5e85a/pRRophetic'
-----------------------------------
ERROR: package installation failed
Thanks again,
Paul.
On Mon, Mar 24, 2014 at 9:49 AM, Martin Maechler
<maech...@stat.math.ethz.ch> wrote:
>>>>>> Paul Geeleher <paulgeele...@gmail.com>
>>>>>> on Mon, 24 Mar 2014 09:37:57 -0500 writes:
>
> > Hey Martin,
> > Thanks for your reply. I actually have documentation, but I pasted a
> > version of the output that was created when I removed the .Rd files
> > (as I suspected they may be causing the problem). Here's the output
> > when the man files are all included (its more or less the same):
>
>
> > $ R CMD build --verbose r_package_files/
> > Warning: unknown option '--verbose'
> > * checking for file 'r_package_files/DESCRIPTION' ... OK
> > * preparing 'pRRophetic':
> > * checking DESCRIPTION meta-information ... OK
> > * installing the package to build vignettes
> > -----------------------------------
> > * installing *source* package 'pRRophetic' ...
> > ** R
> > ** data
> > ** inst
> > ** preparing package for lazy loading
> > Warning: replacing previous import by 'genefilter::Anova' when loading
> > 'pRRophetic'
> > ** help
> > *** installing help indices
> > ** building package indices
> > Error in scan(file, what, nmax, sep, dec, quote, skip, nlines,
> na.strings, :
> > line 1 did not have 38 elements
>
> I see. Now try
>
> options(error=recover)
> tools:::.build_packages("<your_source_package_path>/pRRophetic")
>
>
> > ERROR: installing package indices failed
> > * removing '/tmp/Rtmp6cwCZH/Rinst2f8f69e1ee/pRRophetic'
>
--
Dr. Paul Geeleher, PhD
Section of Hematology-Oncology
Department of Medicine
The University of Chicago
900 E. 57th St.,
KCBD, Room 7144
Chicago, IL 60637
--
www.bioinformaticstutorials.com
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