Hi, I can't reproduce the error with a fully updated CentOS 6 with R-core and R-devel installed from http://www.nic.funet.fi/pub/mirrors/fedora.redhat.com/pub/epel/6/x86_64/. Here is the sessionInfo from my CentOS 6 system where installation of kernlab was successful:
sessionInfo() R version 3.0.1 (2013-05-16) Platform: x86_64-redhat-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.utf8 LC_NUMERIC=C [3] LC_TIME=en_US.utf8 LC_COLLATE=en_US.utf8 [5] LC_MONETARY=en_US.utf8 LC_MESSAGES=en_US.utf8 [7] LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.utf8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tcltk_3.0.1 tools_3.0.1 Best, Ista On Sun, Nov 3, 2013 at 4:15 PM, Lizkitty <lizhen.p...@stonybrook.edu> wrote: > Hi everyone, > > I am trying to install kernlab package, but failed many times by now on > CentOS 6 operating system. FYI, I have no problem with this package > installation on windows platform. > > Here is the error message: > > trying URL 'http://cran.wustl.edu/src/contrib/kernlab_0.9-18.tar.gz' > Content type 'application/x-gzip' length 1069148 bytes (1.0 Mb) > opened URL > ================================================== > downloaded 1.0 Mb > > * installing *source* package âkernlabâ ... > ** package âkernlabâ successfully unpacked and MD5 sums checked > ** libs > g++ -I/n/sw/R-3.0.1_gcc-4.7.2/lib64/R/include -DNDEBUG -I/usr/local/include > -fpic -g -O2 -c brweight.cpp -o brweight.o > In file included from > /n/sw/gcc-4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2/../../../../include/c++/4.7.2/bits/localefwd.h:42:0, > from > /n/sw/gcc-4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2/../../../../include/c++/4.7.2/ios:42, > from > /n/sw/gcc-4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2/../../../../include/c++/4.7.2/ostream:40, > from > /n/sw/gcc-4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2/../../../../include/c++/4.7.2/iostream:40, > from errorcode.h:43, > from brweight.h:43, > from brweight.cpp:42: > /n/sw/gcc-4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2/../../../../include/c++/4.7.2/x86_64-unknown-linux-gnu/bits/c++locale.h:53:23: > error: âuselocaleâ was not declared in this scope > /n/sw/gcc-4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2/../../../../include/c++/4.7.2/x86_64-unknown-linux-gnu/bits/c++locale.h:53:45: > error: invalid type in declaration before â;â token > /n/sw/gcc-4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2/../../../../include/c++/4.7.2/x86_64-unknown-linux-gnu/bits/c++locale.h: > In function âint std::__convert_from_v(__locale_struct* const&, char*, int, > const char*, ...)â: > /n/sw/gcc-4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2/../../../../include/c++/4.7.2/x86_64-unknown-linux-gnu/bits/c++locale.h:76:53: > error: â__gnu_cxx::__uselocaleâ cannot be used as a function > /n/sw/gcc-4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2/../../../../include/c++/4.7.2/x86_64-unknown-linux-gnu/bits/c++locale.h:101:33: > error: â__gnu_cxx::__uselocaleâ cannot be used as a function > make: *** [brweight.o] Error 1 > ERROR: compilation failed for package âkernlabâ > * removing â/n/home09/wang/R/x86_64-unknown-linux-gnu-library/3.0/kernlabâ > > The downloaded source packages are in > â/scratch/tmp/Rtmpt52VjR/downloaded_packagesâ > Warning message: > In install.packages("kernlab") : > installation of package âkernlabâ had non-zero exit status > > > I found out online that many others also failed installing kernlab on linux, > but no explicit unique solutions for this problem. > What I have tried so far are: > 1) change cran mirrors > 2) using command line directly: R CMD INSTALL kernlab_0.9-18.tar.gz, after > downloading the package > 3) reset working directory > Unfortunately, none of these solved my problem... > > Any suggestions are highly appreciated! > > > > -- > View this message in context: > http://r.789695.n4.nabble.com/Failed-to-install-kernlab-package-tp4679652.html > Sent from the R devel mailing list archive at Nabble.com. > > ______________________________________________ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
