Kasper, On 18 October 2012 at 10:41, Kasper Daniel Hansen wrote: | I set my user libraries in .Rprofile for this very reason. I agree it | is weird that .Renviron is not always read etc.
Sorry, no cigar either -- this equivalent to using files in $R_HOME/etc/ and is also ignored by R CMD check, which still fails in my setup as it doesn't find the package -- whereas any normal R session does. Dirk | | Kasper | | On Thu, Oct 18, 2012 at 10:12 AM, Dirk Eddelbuettel <e...@debian.org> wrote: | > | > Keith, | > | > On 18 October 2012 at 09:14, Keith Jewell wrote: | > | No reply in a number of hours, so here is a suggestion from ignorance :-} | > | | > | ?Startup refers to a number of other "site and user files to process for | > | > Thanks, and I know, and use those on Linux (and on 'doze when I use it). My | > question was specifically about 'R CMD foo' which skips some of these by | > choice, and which Rcmd_environ appears to overcome, albeit imcompletely. I | > still have an issue on Windows where I cannot split my package installations | > between those that come and go with R installations, and the others. | > | > But it is truly bizarre that I can do (on Windows) | > | > R CMD INSTALL foo_1.2-3.tar.gz | > | > and a moment later | > | > R CMD check foo_1.2-3.tar.gz | > | > fails in its tests and examples with "no package called 'foo'" | > | > Doing 'R CMD check --no-examples --no-tests foo_1.2-3.tar.gz' works, but is | > less helpful as we're running the check to run those very tests... | > | > Dirk | > | > | > | setting environment variables" but not to Rcmd_environ. The contents of | > | $R_HOME/etc/Rcmd_environ seem to reflect (some of) the contents of | > | (some) other files. | > | | > | I have similar lines (defining library paths) in | > | $R_HOME/etc/Renviron.site | > | | > | Is it correct to directly edit Rcmd_environ or should it be modified | > | only via other files? (A genuine question). | > | | > | On 17/10/2012 15:59, Dirk Eddelbuettel wrote: | > | > | > | > Is there a fundamental reason why I cannot set either one of | > | > | > | > ## add local library path -- doesn't work either | > | > R_LIBS_USER="c:/opt/R-library" | > | > R_LIBS_SITE="c:/opt/R-library" | > | > | > | > in $R_HOME/etc/Rcmd_environ even though I can seemingly set other things here? | > | > | > | > It breaks "R CMD check" for me as I prefer NOT to install packages in a | > | > versioned path. | > | > | > | > FWIW, defaulting to a versioned path is (to this no-longer-bemused user) as | > | > much a permenent R bug (on Windoze) as the default installation into a path | > | > with spaces. | > | > | > | > Dirk | > | > | > | | > | ______________________________________________ | > | R-devel@r-project.org mailing list | > | https://stat.ethz.ch/mailman/listinfo/r-devel | > | > -- | > Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com | > | > ______________________________________________ | > R-devel@r-project.org mailing list | > https://stat.ethz.ch/mailman/listinfo/r-devel -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
