On Mon, 6 Jun 2011, Uwe Ligges wrote:
On 06.06.2011 15:30, Stefan McKinnon Høj-Edwards wrote:
Hello,
I am trying to run "RCMD check" on a package. It performs OK, with the
exception of a single warning:
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
AnnotationFuncsUserguide.Rnw
R CMD build should build the vignettes. If it did not succeed, see its output
for details.
You can also use tools::buildVignettes to do it manually. But R CMD
check is reporting that you failed to do it at all: it is not the job
of R CMD check and the PDF of the vignette should be in the
tarball/directory you supply to be checked.
Uwe Ligges
As I understand the problem, the vignette is not built. However, I have no
problems in doing so manually.
How do I fix this problem? I cannot find any logs for building the
vignette, however the output from building the pdf-file of the manual is
found in the .Rcheck folder.
On a similar note, as my vignette includes a biblio, I have to run "latex"
twice to get the citations referenced properly with a number. Is this an
issue? How can I work around it? (The package is submitted to BioC, so
there might be other rules there?)
It indicates that you failed to use the tools we provided, R CMD
build, tools::buildVignettes() and tools::texi2dvi().
Thank you in advanced.
Yours sincerely,
Stefan McKinnon Høj-Edwards Dept. of Genetics and Biotechnology
PhD student Faculty of Agricultural Sciences
stefan.hoj-edwa...@agrsci.dk Aarhus University
Tel.: +45 8999 1291 Blichers Allé 20, Postboks 50
Web: www.iysik.com DK-8830 Tjele
Tel.: +45 8999 1900
Web: www.agrsci.au.dk
--
Brian D. Ripley, rip...@stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
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