Happy new year everybody,
I'm getting the following while trying to use the agrep() function:
> pattern <- "XXX"
> subject <- c("oooooo", "oooXooo", "oooXXooo", "oooXXXooo")
> max <- list(ins=0, del=0, sub=0) # I want exact matches only
> agrep(pattern, subject, max=max)
[1] 4
OK
> max$sub <- 1 # One allowed substitution
> agrep(pattern, subject, max=max)
[1] 3 4
OK
> max$sub <- 2 # Two allowed substitutions
> agrep(pattern, subject, max=max)
[1] 3 4
Wrong!
> sessionInfo()
R version 2.3.0, 2005-12-22, x86_64-unknown-linux-gnu
attached base packages:
[1] "methods" "stats" "graphics" "grDevices" "utils" "datasets"
[7] "base"
other attached packages:
Biostrings
"1.5.6"
Cheers,
Hervé
--
------------------------
Hervé Pagès
E-mail: [EMAIL PROTECTED]
Phone: (206) 667-5791
Fax: (206) 667-1319
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