Actually, that is a question I should ask. When I use --with-64-bit-indices
option to config petsc, do I need to use 64 integer option in mkl which means
-lmkl_intel_ilp64, or I can use 32integer option for mkl which is
-lmkl_intel_lp64?
Schlumberger-Private
From: Barry Smith <bsm...@petsc.dev>
Sent: Monday, June 15, 2020 12:29 PM
To: Kun Jiao <kj...@slb.com>
Cc: petsc-users@mcs.anl.gov
Subject: [Ext] Re: [petsc-users] configure error
It is reporting
ld: cannot find -lmkl_intel_ilp64
Please send the output from
ls
/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl
ls
/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib
ls
/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64
Also you are mixing using the Intel MPI and OpenMPI, I am not sure this will
work.
/opt/openmpi_4.0.3_intel2019.3/lib
-lmkl_blacs_intelmpi_lp64
On Jun 15, 2020, at 12:11 PM, Kun Jiao via petsc-users
<petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>> wrote:
Hi,
Lately I run into a configure error with intel compiler+openmpi+lapack,
Error message as:
===============================================================================
TESTING: checkLib from
config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:114)
*******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
details):
-------------------------------------------------------------------------------
You set a value for --with-blaslapack-lib=<lib>, but
['-L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64',
'-Wl,', '--no-as-needed', '-lmkl_intel_ilp64', '-lmkl_intel_thread',
'-lmkl_core', '-liomp5', '-lpthread', '-lm', '-ldl'] cannot be used
*******************************************************************************
Here is my configure parameters:
./configure --configModules=PETSc.Configure
--optionsModule=config.compilerOptions --configModules=PETSc.Configure
--optionsModule=config.compilerOptions PETSC_ARCH=linux-gnu-intel
--with-precision=single --with-cc=icc --with-cxx=icc --with-fc=ifort
--with-mpi-include=/opt/openmpi_4.0.3_intel2019.3/include
--with-mpi-lib="-L/opt/openmpi_4.0.3_intel2019.3/lib -lmpi_usempif08
-lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi"
--with-blaslapack-include="/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/include"
--with-blaslapack-lib="-L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64
-Wl, --no-as-needed -lmkl_intel_ilp64 -lmkl_intel_thread -lmkl_core -liomp5
-lpthread -lm -ldl"
--with-scalapack-lib="-L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64
-lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64"
--with-scalapack-include=/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/include
--with-cmake=1 --prefix=/opt/petsc_3.10.4_intel2019.3 --known-endian=big
--with-debugging=0 --COPTFLAGS=" -Ofast -xHost" --CXXOPTFLAGS=" -Ofast -xHost"
--FOPTLAGS=" -Ofast -xHost" --with-x=0 --with-64-bit-indices
And configure.log attached.
Any suggestion will be great?
Regards,
Kun
Schlumberger-Private
<configure.log>
