Thanks. Let me fix that. Try it again.
From: Matthew Knepley <knep...@gmail.com> Sent: Monday, June 15, 2020 12:25 PM To: Kun Jiao <kj...@slb.com> Cc: petsc-users@mcs.anl.gov Subject: [Ext] Re: [petsc-users] configure error On Mon, Jun 15, 2020 at 12:13 PM Kun Jiao via petsc-users <petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>> wrote: Hi, Lately I run into a configure error with intel compiler+openmpi+lapack, Error message as: =============================================================================== TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:114) ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- You set a value for --with-blaslapack-lib=<lib>, but ['-L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64', '-Wl,', '--no-as-needed', '-lmkl_intel_ilp64', '-lmkl_intel_thread', '-lmkl_core', '-liomp5', '-lpthread', '-lm', '-ldl'] cannot be used ******************************************************************************* You input looks wrong: Executing: icc -o /tmp/petsc-srHpJ6/config.libraries/conftest -fPIC -wd1572 -Ofast -xHost /tmp/petsc-srHpJ6/config.libraries/conftest.o -L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 -Wl, --no-as-needed -lmkl_intel_ilp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm -ldl -lstdc++ -ldl -Wl,-rpath,/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mpi/intel64/libfabric/lib -L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mpi/intel64/libfabric/lib -Wl,-rpath,/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin -L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64_lin -L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64_lin -Wl,-rpath,/opt/2019.3/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin -L/opt/2019.3/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/opt/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/opt/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/opt/gcc-4.9.2/lib64 -L/opt/gcc-4.9.2/lib64 -Wl,-rpath,/opt/gcc-4.9.2/lib -L/opt/gcc-4.9.2/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl Possible ERROR while running linker: exit code 256 stderr: icc: command line warning #10006: ignoring unknown option '-fno-as-needed' ld: cannot find -lmkl_intel_ilp64 Thanks, Matt Here is my configure parameters: ./configure --configModules=PETSc.Configure --optionsModule=config.compilerOptions --configModules=PETSc.Configure --optionsModule=config.compilerOptions PETSC_ARCH=linux-gnu-intel --with-precision=single --with-cc=icc --with-cxx=icc --with-fc=ifort --with-mpi-include=/opt/openmpi_4.0.3_intel2019.3/include --with-mpi-lib="-L/opt/openmpi_4.0.3_intel2019.3/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi" --with-blaslapack-include="/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/include" --with-blaslapack-lib="-L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 -Wl, --no-as-needed -lmkl_intel_ilp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm -ldl" --with-scalapack-lib="-L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64" --with-scalapack-include=/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/include --with-cmake=1 --prefix=/opt/petsc_3.10.4_intel2019.3 --known-endian=big --with-debugging=0 --COPTFLAGS=" -Ofast -xHost" --CXXOPTFLAGS=" -Ofast -xHost" --FOPTLAGS=" -Ofast -xHost" --with-x=0 --with-64-bit-indices And configure.log attached. Any suggestion will be great? Regards, Kun Schlumberger-Private -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener https://www.cse.buffalo.edu/~knepley/<https://urldefense.com/v3/__http:/www.cse.buffalo.edu/*knepley/__;fg!!Kjv0uj3L4nM6H-I!1ueS5T3NXrUZpRJ-y9xzwEEC4qD9A4qg2XevGBUA5zFFTcaDAleEh6w9f7Q$> Schlumberger-Private
