Sometimes they are cryptic, sometimes just wrong. On Sat, Mar 9, 2024 at 4:20 PM Mauro Cavalcanti <[email protected]> wrote:
> Dear Dr. Adams, > > It works fine now, with thf fix you provided. R error messages are rather > cryptic! > > Thanks a lot! > > Warmest regards, > > Em sáb., 9 de mar. de 2024 às 18:02, Adams, Dean [EEOB] < > [email protected]> escreveu: > >> For reasons due to CRAN becoming more stringent with S3-type function >> calls, we needed to change the plot.param to: >> >> >> >> plot_param … (the previous no looks for an object or function called >> ‘param’). >> >> >> >> Dean >> >> >> >> Dr. Dean C. Adams >> >> Distinguished Professor of Evolutionary Biology >> >> Department of Ecology, Evolution, and Organismal Biology >> >> Iowa State University >> >> https://faculty.sites.iastate.edu/dcadams/ >> >> phone: 515-294-3834 >> >> >> >> *From:* [email protected] <[email protected]> *On >> Behalf Of *Mauro Cavalcanti >> *Sent:* Saturday, March 9, 2024 2:52 PM >> *To:* Morphmet <[email protected]> >> *Subject:* [MORPHMET2] Error attempting running 'plotAllSpecimens()' >> function in geomorph R package >> >> >> >> Dear ALL, >> >> >> >> I have been getting an error when attempting to run function >> plotAllSpecimens() in geomorph R. package version 4.0.7 (the latest). The >> error appears when I attempt to pass a list of parameters to customize the >> plot. >> >> >> >> I tried the following: >> >> >> >> data(plethodon) >> >> Y.gpa<-gpagen(plethodon$land, print.progress = FALSE) >> >> plotAllSpecimens(Y.gpa$coords,links=plethodon$links,label=TRUE, >> plot.param = list(pt.bg = "green", mean.cex=1, link.col="red", >> txt.pos=3, txt.cex=1)) >> >> >> >> The error message below is displayed: >> >> >> >> Error in plotAllSpecimens(Y.gpa$coords, links = plethodon$links, label = >> TRUE, : >> >> unused argument (plot.param = list(pt.bg = "green", mean.cex = 1, link.col >> = "red", txt.pos = 3, txt.cex = 1)) >> >> >> >> Looking quickly at the function source, I could not discern any obvious >> problems. >> >> >> >> I am currently running R version 4.3.2 and get the warming messages below >> when loading geomorph and associated packages: >> >> >> >> Warning messages: >> >> 1: package ‘geomorph’ was built under R version 4.3.3 >> >> 2: package ‘rgl’ was built under R version 4.3.3 >> >> >> >> Could someone out there provide some hints on how to solve this problem? >> >> >> >> Thanks in advance! >> >> >> >> With best regards, >> >> >> >> -- >> >> Dr. Mauro J. Cavalcanti >> E-mail: [email protected] >> Web: https://github.com/maurobio >> "Life is complex. It consists of real and imaginary parts." >> >> -- >> You received this message because you are subscribed to the Google Groups >> "Morphmet" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/morphmet2/CAC1JhZbXtN1tU48WgoNu45TbmM6Nmejz3PpSbB_CjMju0ejqRA%40mail.gmail.com >> <https://groups.google.com/d/msgid/morphmet2/CAC1JhZbXtN1tU48WgoNu45TbmM6Nmejz3PpSbB_CjMju0ejqRA%40mail.gmail.com?utm_medium=email&utm_source=footer> >> . >> > > > -- > Dr. Mauro J. Cavalcanti > E-mail: [email protected] > Web: https://github.com/maurobio > "Life is complex. It consists of real and imaginary parts." > > -- > You received this message because you are subscribed to the Google Groups > "Morphmet" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/morphmet2/CAC1JhZbZNYKAV-12h%3DsFFeQG%2B5HUjG0TW4P8sO5YfgLKNTmWmg%40mail.gmail.com > <https://groups.google.com/d/msgid/morphmet2/CAC1JhZbZNYKAV-12h%3DsFFeQG%2B5HUjG0TW4P8sO5YfgLKNTmWmg%40mail.gmail.com?utm_medium=email&utm_source=footer> > . > -- Miriam Zelditch Associate Research Scientist Museum of Paleontology University of Michigan Ann Arbor, MI 48109-1079 cell: 734-353-1671 phone: 734-764-0489 fax: 734-936-1380 -- You received this message because you are subscribed to the Google Groups "Morphmet" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/morphmet2/CA%2BxQ-HRW%3DovObjM-EyVYP8naWSq3RbrXSL9Dx5pjDBpk%2Bpa4AQ%40mail.gmail.com.
