Dear Christy, 2 freeware options: You can do this in 3Dslicer using the extension Slicermorph's 'segment endocranium' function (Slicer can obviously segment the original stacks from a wide variety of sanners as well): https://github.com/SlicerMorph/SlicerMorph#module-descriptions If you already have 3d models from segmentation, you can use the Endomaker function in the R package Arothron. This is particularly useful if you have lots of models and want to easily fully automate this via scripting. https://doi.org/10.1002/ajpa.24043 Both Murat Maga (PI on Slicermorph) and Antonio Profico (who wrote Endomaker) are members of this list. Regards, Tom
On Thu, 23 Feb 2023 at 11:43, Christy Hipsley <[email protected]> wrote: > Hi all, > > I'm looking for programs to generate cranial endocasts from CT data of > mammal skulls. While I can do this manually, I prefer something > (semi-)automated to minimise potential user-bias. > > Thanks for any advice, > Christy > > *Dr Christy Anna Hipsley | **Associate Professor* > Department of Biology, University of Copenhagen > > > -- > You received this message because you are subscribed to the Google Groups > "Morphmet" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/morphmet2/671faccd-f795-4791-bab6-cc510fa9d438n%40googlegroups.com > <https://groups.google.com/d/msgid/morphmet2/671faccd-f795-4791-bab6-cc510fa9d438n%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "Morphmet" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/morphmet2/CAKeC_jwm0w-B_9La9E1YcoG_fBFDP%2BEeu%2BXbOj8dRYPsssi8BA%40mail.gmail.com.
