benwtrent commented on code in PR #12582: URL: https://github.com/apache/lucene/pull/12582#discussion_r1344513453
########## lucene/core/src/java/org/apache/lucene/codecs/lucene99/Lucene99HnswVectorsWriter.java: ########## @@ -0,0 +1,1170 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one or more + * contributor license agreements. See the NOTICE file distributed with + * this work for additional information regarding copyright ownership. + * The ASF licenses this file to You under the Apache License, Version 2.0 + * (the "License"); you may not use this file except in compliance with + * the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +package org.apache.lucene.codecs.lucene99; + +import static org.apache.lucene.codecs.lucene99.Lucene99HnswVectorsFormat.DIRECT_MONOTONIC_BLOCK_SHIFT; +import static org.apache.lucene.codecs.lucene99.Lucene99ScalarQuantizedVectorsFormat.calculateDefaultQuantile; +import static org.apache.lucene.search.DocIdSetIterator.NO_MORE_DOCS; + +import java.io.IOException; +import java.nio.ByteBuffer; +import java.nio.ByteOrder; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collections; +import java.util.HashMap; +import java.util.List; +import java.util.Map; +import org.apache.lucene.codecs.CodecUtil; +import org.apache.lucene.codecs.HnswGraphProvider; +import org.apache.lucene.codecs.KnnFieldVectorsWriter; +import org.apache.lucene.codecs.KnnVectorsReader; +import org.apache.lucene.codecs.KnnVectorsWriter; +import org.apache.lucene.codecs.lucene90.IndexedDISI; +import org.apache.lucene.codecs.perfield.PerFieldKnnVectorsFormat; +import org.apache.lucene.index.ByteVectorValues; +import org.apache.lucene.index.DocsWithFieldSet; +import org.apache.lucene.index.FieldInfo; +import org.apache.lucene.index.FloatVectorValues; +import org.apache.lucene.index.IndexFileNames; +import org.apache.lucene.index.MergeState; +import org.apache.lucene.index.SegmentWriteState; +import org.apache.lucene.index.Sorter; +import org.apache.lucene.index.VectorEncoding; +import org.apache.lucene.search.DocIdSetIterator; +import org.apache.lucene.store.IndexInput; +import org.apache.lucene.store.IndexOutput; +import org.apache.lucene.util.ArrayUtil; +import org.apache.lucene.util.Bits; +import org.apache.lucene.util.IOUtils; +import org.apache.lucene.util.InfoStream; +import org.apache.lucene.util.RamUsageEstimator; +import org.apache.lucene.util.hnsw.HnswGraph; +import org.apache.lucene.util.hnsw.HnswGraph.NodesIterator; +import org.apache.lucene.util.hnsw.HnswGraphBuilder; +import org.apache.lucene.util.hnsw.NeighborArray; +import org.apache.lucene.util.hnsw.OnHeapHnswGraph; +import org.apache.lucene.util.hnsw.RandomAccessVectorValues; +import org.apache.lucene.util.hnsw.RandomVectorScorerSupplier; +import org.apache.lucene.util.packed.DirectMonotonicWriter; + +/** + * Writes vector values and knn graphs to index segments. + * + * @lucene.experimental + */ +public final class Lucene99HnswVectorsWriter extends KnnVectorsWriter { + + private final SegmentWriteState segmentWriteState; + private final IndexOutput meta, vectorData, quantizedVectorData, vectorIndex; + private final int M; + private final int beamWidth; + private final Lucene99ScalarQuantizedVectorsWriter quantizedVectorsWriter; + + private final List<FieldWriter<?>> fields = new ArrayList<>(); + private boolean finished; + + Lucene99HnswVectorsWriter( + SegmentWriteState state, + int M, + int beamWidth, + Lucene99ScalarQuantizedVectorsFormat quantizedVectorsFormat) + throws IOException { + this.M = M; + this.beamWidth = beamWidth; + segmentWriteState = state; + String metaFileName = + IndexFileNames.segmentFileName( + state.segmentInfo.name, state.segmentSuffix, Lucene99HnswVectorsFormat.META_EXTENSION); + + String vectorDataFileName = + IndexFileNames.segmentFileName( + state.segmentInfo.name, + state.segmentSuffix, + Lucene99HnswVectorsFormat.VECTOR_DATA_EXTENSION); + + String indexDataFileName = + IndexFileNames.segmentFileName( + state.segmentInfo.name, + state.segmentSuffix, + Lucene99HnswVectorsFormat.VECTOR_INDEX_EXTENSION); + + final String quantizedVectorDataFileName = + quantizedVectorsFormat != null + ? IndexFileNames.segmentFileName( + state.segmentInfo.name, + state.segmentSuffix, + Lucene99ScalarQuantizedVectorsFormat.QUANTIZED_VECTOR_DATA_EXTENSION) + : null; + boolean success = false; + try { + meta = state.directory.createOutput(metaFileName, state.context); + vectorData = state.directory.createOutput(vectorDataFileName, state.context); + vectorIndex = state.directory.createOutput(indexDataFileName, state.context); + + CodecUtil.writeIndexHeader( + meta, + Lucene99HnswVectorsFormat.META_CODEC_NAME, + Lucene99HnswVectorsFormat.VERSION_CURRENT, + state.segmentInfo.getId(), + state.segmentSuffix); + CodecUtil.writeIndexHeader( + vectorData, + Lucene99HnswVectorsFormat.VECTOR_DATA_CODEC_NAME, + Lucene99HnswVectorsFormat.VERSION_CURRENT, + state.segmentInfo.getId(), + state.segmentSuffix); + CodecUtil.writeIndexHeader( + vectorIndex, + Lucene99HnswVectorsFormat.VECTOR_INDEX_CODEC_NAME, + Lucene99HnswVectorsFormat.VERSION_CURRENT, + state.segmentInfo.getId(), + state.segmentSuffix); + if (quantizedVectorDataFileName != null) { + quantizedVectorData = + state.directory.createOutput(quantizedVectorDataFileName, state.context); + CodecUtil.writeIndexHeader( + quantizedVectorData, + Lucene99ScalarQuantizedVectorsFormat.QUANTIZED_VECTOR_DATA_CODEC_NAME, + Lucene99ScalarQuantizedVectorsFormat.VERSION_CURRENT, + state.segmentInfo.getId(), + state.segmentSuffix); + quantizedVectorsWriter = + new Lucene99ScalarQuantizedVectorsWriter( + quantizedVectorData, quantizedVectorsFormat.quantile); + } else { + quantizedVectorData = null; + quantizedVectorsWriter = null; + } + success = true; + } finally { + if (success == false) { + IOUtils.closeWhileHandlingException(this); + } + } + } + + @Override + public KnnFieldVectorsWriter<?> addField(FieldInfo fieldInfo) throws IOException { + Lucene99ScalarQuantizedVectorsWriter.QuantizationVectorWriter quantizedVectorFieldWriter = null; + // Quantization only supports FLOAT32 for now + if (quantizedVectorsWriter != null + && fieldInfo.getVectorEncoding().equals(VectorEncoding.FLOAT32)) { + quantizedVectorFieldWriter = quantizedVectorsWriter.addField(fieldInfo); + } + FieldWriter<?> newField = + FieldWriter.create( + fieldInfo, M, beamWidth, segmentWriteState.infoStream, quantizedVectorFieldWriter); + fields.add(newField); + return newField; + } + + @Override + public void flush(int maxDoc, Sorter.DocMap sortMap) throws IOException { + for (FieldWriter<?> field : fields) { + long[] quantizedVectorOffsetAndLen = null; + if (field.quantizedWriter != null) { + assert quantizedVectorsWriter != null; + quantizedVectorOffsetAndLen = + quantizedVectorsWriter.flush(sortMap, field.quantizedWriter, field.docsWithField); + } + if (sortMap == null) { + writeField(field, maxDoc, quantizedVectorOffsetAndLen); + } else { + writeSortingField(field, maxDoc, sortMap, quantizedVectorOffsetAndLen); + } + } + } + + @Override + public void finish() throws IOException { + if (finished) { + throw new IllegalStateException("already finished"); + } + finished = true; + if (quantizedVectorsWriter != null) { + quantizedVectorsWriter.finish(); + } + + if (meta != null) { + // write end of fields marker + meta.writeInt(-1); + CodecUtil.writeFooter(meta); + } + if (vectorData != null) { + CodecUtil.writeFooter(vectorData); + CodecUtil.writeFooter(vectorIndex); + } + } + + @Override + public long ramBytesUsed() { + long total = 0; + for (FieldWriter<?> field : fields) { + total += field.ramBytesUsed(); + } + return total; + } + + private void writeField(FieldWriter<?> fieldData, int maxDoc, long[] quantizedVecOffsetAndLen) + throws IOException { + // write vector values + long vectorDataOffset = vectorData.alignFilePointer(Float.BYTES); + switch (fieldData.fieldInfo.getVectorEncoding()) { + case BYTE -> writeByteVectors(fieldData); + case FLOAT32 -> writeFloat32Vectors(fieldData); + } + long vectorDataLength = vectorData.getFilePointer() - vectorDataOffset; + + // write graph + long vectorIndexOffset = vectorIndex.getFilePointer(); + OnHeapHnswGraph graph = fieldData.getGraph(); + int[][] graphLevelNodeOffsets = writeGraph(graph); + long vectorIndexLength = vectorIndex.getFilePointer() - vectorIndexOffset; + + writeMeta( + fieldData.isQuantized(), + fieldData.fieldInfo, + maxDoc, + fieldData.getConfiguredQuantile(), + fieldData.getMinQuantile(), + fieldData.getMaxQuantile(), + quantizedVecOffsetAndLen, + vectorDataOffset, + vectorDataLength, + vectorIndexOffset, + vectorIndexLength, + fieldData.docsWithField, + graph, + graphLevelNodeOffsets); + } + + private void writeFloat32Vectors(FieldWriter<?> fieldData) throws IOException { + final ByteBuffer buffer = + ByteBuffer.allocate(fieldData.dim * Float.BYTES).order(ByteOrder.LITTLE_ENDIAN); + for (Object v : fieldData.vectors) { + buffer.asFloatBuffer().put((float[]) v); + vectorData.writeBytes(buffer.array(), buffer.array().length); + } + } + + private void writeByteVectors(FieldWriter<?> fieldData) throws IOException { + for (Object v : fieldData.vectors) { + byte[] vector = (byte[]) v; + vectorData.writeBytes(vector, vector.length); + } + } + + private void writeSortingField( + FieldWriter<?> fieldData, + int maxDoc, + Sorter.DocMap sortMap, + long[] quantizedVectorOffsetAndLen) + throws IOException { + final int[] docIdOffsets = new int[sortMap.size()]; + int offset = 1; // 0 means no vector for this (field, document) + DocIdSetIterator iterator = fieldData.docsWithField.iterator(); + for (int docID = iterator.nextDoc(); + docID != DocIdSetIterator.NO_MORE_DOCS; + docID = iterator.nextDoc()) { + int newDocID = sortMap.oldToNew(docID); + docIdOffsets[newDocID] = offset++; + } + DocsWithFieldSet newDocsWithField = new DocsWithFieldSet(); + final int[] ordMap = new int[offset - 1]; // new ord to old ord + final int[] oldOrdMap = new int[offset - 1]; // old ord to new ord + int ord = 0; + int doc = 0; + for (int docIdOffset : docIdOffsets) { + if (docIdOffset != 0) { + ordMap[ord] = docIdOffset - 1; + oldOrdMap[docIdOffset - 1] = ord; + newDocsWithField.add(doc); + ord++; + } + doc++; + } + + // write vector values + long vectorDataOffset = + switch (fieldData.fieldInfo.getVectorEncoding()) { + case BYTE -> writeSortedByteVectors(fieldData, ordMap); + case FLOAT32 -> writeSortedFloat32Vectors(fieldData, ordMap); + }; + long vectorDataLength = vectorData.getFilePointer() - vectorDataOffset; + + // write graph + long vectorIndexOffset = vectorIndex.getFilePointer(); + OnHeapHnswGraph graph = fieldData.getGraph(); + int[][] graphLevelNodeOffsets = graph == null ? new int[0][] : new int[graph.numLevels()][]; + HnswGraph mockGraph = reconstructAndWriteGraph(graph, ordMap, oldOrdMap, graphLevelNodeOffsets); + long vectorIndexLength = vectorIndex.getFilePointer() - vectorIndexOffset; + + writeMeta( + fieldData.isQuantized(), + fieldData.fieldInfo, + maxDoc, + fieldData.getConfiguredQuantile(), + fieldData.getMinQuantile(), + fieldData.getMaxQuantile(), + quantizedVectorOffsetAndLen, + vectorDataOffset, + vectorDataLength, + vectorIndexOffset, + vectorIndexLength, + newDocsWithField, + mockGraph, + graphLevelNodeOffsets); + } + + private long writeSortedFloat32Vectors(FieldWriter<?> fieldData, int[] ordMap) + throws IOException { + long vectorDataOffset = vectorData.alignFilePointer(Float.BYTES); + final ByteBuffer buffer = + ByteBuffer.allocate(fieldData.dim * Float.BYTES).order(ByteOrder.LITTLE_ENDIAN); + for (int ordinal : ordMap) { + float[] vector = (float[]) fieldData.vectors.get(ordinal); + buffer.asFloatBuffer().put(vector); + vectorData.writeBytes(buffer.array(), buffer.array().length); + } + return vectorDataOffset; + } + + private long writeSortedByteVectors(FieldWriter<?> fieldData, int[] ordMap) throws IOException { + long vectorDataOffset = vectorData.alignFilePointer(Float.BYTES); + for (int ordinal : ordMap) { + byte[] vector = (byte[]) fieldData.vectors.get(ordinal); + vectorData.writeBytes(vector, vector.length); + } + return vectorDataOffset; + } + + /** + * Reconstructs the graph given the old and new node ids. + * + * <p>Additionally, the graph node connections are written to the vectorIndex. + * + * @param graph The current on heap graph + * @param newToOldMap the new node ids indexed to the old node ids + * @param oldToNewMap the old node ids indexed to the new node ids + * @param levelNodeOffsets where to place the new offsets for the nodes in the vector index. + * @return The graph + * @throws IOException if writing to vectorIndex fails + */ + private HnswGraph reconstructAndWriteGraph( + OnHeapHnswGraph graph, int[] newToOldMap, int[] oldToNewMap, int[][] levelNodeOffsets) + throws IOException { + if (graph == null) return null; + + List<int[]> nodesByLevel = new ArrayList<>(graph.numLevels()); + nodesByLevel.add(null); + + int maxOrd = graph.size(); + NodesIterator nodesOnLevel0 = graph.getNodesOnLevel(0); + levelNodeOffsets[0] = new int[nodesOnLevel0.size()]; + while (nodesOnLevel0.hasNext()) { + int node = nodesOnLevel0.nextInt(); + NeighborArray neighbors = graph.getNeighbors(0, newToOldMap[node]); + long offset = vectorIndex.getFilePointer(); + reconstructAndWriteNeigbours(neighbors, oldToNewMap, maxOrd); + levelNodeOffsets[0][node] = Math.toIntExact(vectorIndex.getFilePointer() - offset); + } + + for (int level = 1; level < graph.numLevels(); level++) { + NodesIterator nodesOnLevel = graph.getNodesOnLevel(level); + int[] newNodes = new int[nodesOnLevel.size()]; + for (int n = 0; nodesOnLevel.hasNext(); n++) { + newNodes[n] = oldToNewMap[nodesOnLevel.nextInt()]; + } + Arrays.sort(newNodes); + nodesByLevel.add(newNodes); + levelNodeOffsets[level] = new int[newNodes.length]; + int nodeOffsetIndex = 0; + for (int node : newNodes) { + NeighborArray neighbors = graph.getNeighbors(level, newToOldMap[node]); + long offset = vectorIndex.getFilePointer(); + reconstructAndWriteNeigbours(neighbors, oldToNewMap, maxOrd); + levelNodeOffsets[level][nodeOffsetIndex++] = + Math.toIntExact(vectorIndex.getFilePointer() - offset); + } + } + return new HnswGraph() { + @Override + public int nextNeighbor() { + throw new UnsupportedOperationException("Not supported on a mock graph"); + } + + @Override + public void seek(int level, int target) { + throw new UnsupportedOperationException("Not supported on a mock graph"); + } + + @Override + public int size() { + return graph.size(); + } + + @Override + public int numLevels() { + return graph.numLevels(); + } + + @Override + public int entryNode() { + throw new UnsupportedOperationException("Not supported on a mock graph"); + } + + @Override + public NodesIterator getNodesOnLevel(int level) { + if (level == 0) { + return graph.getNodesOnLevel(0); + } else { + return new ArrayNodesIterator(nodesByLevel.get(level), nodesByLevel.get(level).length); + } + } + }; + } + + private void reconstructAndWriteNeigbours(NeighborArray neighbors, int[] oldToNewMap, int maxOrd) + throws IOException { + int size = neighbors.size(); + vectorIndex.writeVInt(size); + + // Destructively modify; it's ok we are discarding it after this + int[] nnodes = neighbors.node(); + for (int i = 0; i < size; i++) { + nnodes[i] = oldToNewMap[nnodes[i]]; + } + Arrays.sort(nnodes, 0, size); + // Now that we have sorted, do delta encoding to minimize the required bits to store the + // information + for (int i = size - 1; i > 0; --i) { + assert nnodes[i] < maxOrd : "node too large: " + nnodes[i] + ">=" + maxOrd; + nnodes[i] -= nnodes[i - 1]; + } + for (int i = 0; i < size; i++) { + vectorIndex.writeVInt(nnodes[i]); + } + } + + @Override + public void mergeOneField(FieldInfo fieldInfo, MergeState mergeState) throws IOException { + long vectorDataOffset = vectorData.alignFilePointer(Float.BYTES); + IndexOutput tempVectorData = + segmentWriteState.directory.createTempOutput( + vectorData.getName(), "temp", segmentWriteState.context); + IndexInput vectorDataInput = null; + IndexInput quantizationDataInput = null; + Lucene99ScalarQuantizedVectorsWriter.MergedQuantileState quantizationState = null; + boolean success = false; + try { + long[] quantizedVectorDataOffsetAndLength = null; + if (quantizedVectorsWriter != null) { + quantizationState = + quantizedVectorsWriter.mergeOneField(segmentWriteState, fieldInfo, mergeState); + if (quantizationState != null) { + quantizedVectorDataOffsetAndLength = new long[2]; + quantizedVectorDataOffsetAndLength[0] = quantizedVectorData.alignFilePointer(Float.BYTES); + quantizationDataInput = + segmentWriteState.directory.openInput( + quantizationState.tempVectorFileName, segmentWriteState.context); + quantizedVectorData.copyBytes( + quantizationDataInput, quantizationDataInput.length() - CodecUtil.footerLength()); + quantizedVectorDataOffsetAndLength[1] = + quantizedVectorData.getFilePointer() - quantizedVectorDataOffsetAndLength[0]; + CodecUtil.retrieveChecksum(quantizationDataInput); + } + } + // write the vector data to a temporary file Review Comment: updated @jimczi what do you think? -- This is an automated message from the Apache Git Service. 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